☆76Oct 19, 2024Updated last year
Alternatives and similar repositories for megaDNA
Users that are interested in megaDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detection of phage RBPs based on protein domains and machine learning☆32Feb 5, 2025Updated last year
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- ☆52Aug 19, 2024Updated last year
- ☆35Dec 20, 2023Updated 2 years ago
- Systematic search of all known anti-phage systems.☆159Apr 2, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Phage Annotation using Protein Structures☆158Apr 24, 2026Updated last week
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- ☆11Jun 3, 2025Updated 10 months ago
- The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.☆360Apr 9, 2026Updated 3 weeks ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Apr 21, 2026Updated last week
- ☆33Mar 3, 2024Updated 2 years ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆45Updated this week
- ☆20Oct 18, 2024Updated last year
- ☆11Aug 2, 2024Updated last year
- FuncFetch workflow scripts☆15Jun 9, 2025Updated 10 months ago
- The viral taxonomic assignment pipeline☆43Apr 16, 2026Updated 2 weeks ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 2 months ago
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Jun 22, 2024Updated last year
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- ☆17Apr 13, 2026Updated 2 weeks ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated 9 months ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆777Apr 22, 2025Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆230Feb 20, 2026Updated 2 months ago
- Genomic Pre-trained Network☆339Mar 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆14Feb 7, 2022Updated 4 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 3 months ago
- Bilingual Language Model for Protein Sequence and Structure☆309Mar 6, 2026Updated last month
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆480Jan 1, 2026Updated 4 months ago
- Inference and numerics for multi-hybrid AI model architectures☆103Mar 3, 2026Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 10 months ago