christopher-vollmers / Mandalorion-oldLinks
Analysis Pipeline to analyze Nanopore RNAseq data
☆29Updated 3 years ago
Alternatives and similar repositories for Mandalorion-old
Users that are interested in Mandalorion-old are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- ☆51Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Adapters for trimming☆30Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- ☆35Updated 4 years ago