christopher-vollmers / Mandalorion-old
Analysis Pipeline to analyze Nanopore RNAseq data
☆29Updated 2 years ago
Alternatives and similar repositories for Mandalorion-old:
Users that are interested in Mandalorion-old are comparing it to the libraries listed below
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- ☆21Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- processing 10x genomics reads☆24Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆16Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- A tool for evaluating RNA seq mapping☆23Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Useful tools for working with Salmon output☆36Updated 4 years ago
- Version II of Mandalorion☆32Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Simulation tool for ChIP- and other -seq experiments☆13Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Adapters for trimming☆30Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆29Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago