dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASDLinks
Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
☆13Updated 3 years ago
Alternatives and similar repositories for Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
Users that are interested in Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD are comparing it to the libraries listed below
Sorting:
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆13Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- ☆18Updated 3 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 2 months ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆20Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- R package for tissue-specific gene enrichment☆15Updated 3 years ago
- scRNA-seq data visualization from scrattch☆28Updated 3 months ago
- Image processing pipeline for spatial projects☆17Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- ☆30Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated last month
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- ☆35Updated 2 years ago
- DiffNetFDR☆10Updated 7 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago