EngreitzLab / ABC-GWAS-Paper
Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021
☆14Updated 4 years ago
Alternatives and similar repositories for ABC-GWAS-Paper:
Users that are interested in ABC-GWAS-Paper are comparing it to the libraries listed below
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆49Updated 8 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- ☆33Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆40Updated 2 weeks ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆12Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 9 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 3 weeks ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- ☆32Updated 5 years ago
- ☆11Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- ☆17Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- ☆17Updated 5 years ago
- ☆30Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ☆24Updated last year
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year