wassermanlab / TFFMLinks
TFFM framework
☆13Updated 4 months ago
Alternatives and similar repositories for TFFM
Users that are interested in TFFM are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Genetics training camp☆21Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 3 months ago
- Response to blog post about Salmon☆37Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- ☆21Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 8 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16Updated 11 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Glimma R package☆50Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago