wassermanlab / TFFM
TFFM framework
☆12Updated 3 years ago
Alternatives and similar repositories for TFFM:
Users that are interested in TFFM are comparing it to the libraries listed below
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- Genetics training camp☆21Updated 4 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 4 months ago
- ☆19Updated 7 years ago
- ChIP-seq peak calling with GC effects adjustment☆9Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- probability of mendelian error in trios.☆11Updated 9 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- ☆12Updated 6 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 10 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 6 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- significance testing over interval overlaps☆30Updated 4 years ago