SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
☆20Oct 29, 2026Updated this week
Alternatives and similar repositories for slip
Users that are interested in slip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cross-protein transfer learning for variant effect prediction☆21Sep 13, 2023Updated 3 years ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆73Feb 21, 2026Updated 8 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆138Nov 17, 2021Updated 4 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- ☆10Apr 12, 2023Updated 3 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- ☆16Apr 3, 2025Updated last year
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆90Jul 6, 2023Updated 3 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆13May 10, 2026Updated 5 months ago
- ☆37Oct 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Interactive visualization of mutational antigenic profiling data☆11Aug 17, 2020Updated 6 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- Supporting information for predicting and engineering post-translational modifcations using Rosetta☆10Feb 13, 2024Updated 2 years ago
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated 2 years ago
- Neural networks for deep mutational scanning data☆75May 30, 2025Updated last year
- ☆77Sep 2, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A standard library for biological research.☆40Sep 2, 2025Updated last year
- ☆11Apr 21, 2023Updated 3 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Ultra-fast in-silico structure mutation☆37Apr 9, 2025Updated last year
- TrDesign w/ Partial Hallucination support☆10Apr 29, 2022Updated 4 years ago
- ☆13Jun 7, 2025Updated last year
- ☆23Jul 4, 2021Updated 5 years ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 3 years ago
- ☆261Jul 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆61Nov 21, 2022Updated 3 years ago
- ☆10Aug 3, 2023Updated 3 years ago
- The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular …☆10Oct 7, 2026Updated 3 weeks ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 3 years ago
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- ☆11Feb 3, 2026Updated 8 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago