google-research / slipLinks
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
☆19Updated last year
Alternatives and similar repositories for slip
Users that are interested in slip are comparing it to the libraries listed below
Sorting:
- ML-guided enzyme engineering☆63Updated last week
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 5 months ago
- ☆31Updated 4 years ago
- Transfer learning for Mutation Effect Prediction☆16Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ☆27Updated 7 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆23Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆36Updated this week
- ☆36Updated 7 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 3 years ago
- Predict the structure of immune receptor proteins☆49Updated 6 months ago
- Consolidated repository to perform RLXF☆25Updated 3 weeks ago
- Code for holographic machine learning of proteins☆23Updated 7 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆29Updated 2 months ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Differentiable Pairing using Alignment-based Language Models☆21Updated last year
- Ultra-fast in-silico structure mutation☆33Updated last month
- ☆35Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 9 months ago
- Structure prediction of alternative protein conformations☆75Updated 3 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆29Updated 9 months ago
- ☆67Updated 2 months ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated last year
- Protein Structure Archiver☆12Updated 11 months ago