google-research / slip
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
☆19Updated last year
Alternatives and similar repositories for slip:
Users that are interested in slip are comparing it to the libraries listed below
- ML-guided enzyme engineering☆57Updated 3 weeks ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆28Updated 2 years ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆34Updated this week
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- ☆26Updated 5 months ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Differentiable Pairing using Alignment-based Language Models☆19Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 3 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆41Updated last week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 7 months ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 3 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆56Updated 10 months ago
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- dMaSIF implementation for google colab☆31Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆32Updated 3 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 7 months ago
- ☆62Updated this week
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆50Updated 3 weeks ago
- ☆28Updated last year
- ☆36Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated 2 weeks ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆11Updated last year
- Code for holographic machine learning of proteins☆22Updated 4 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆23Updated last year
- Transfer learning for Mutation Effect Prediction☆15Updated last year
- ☆36Updated 5 months ago
- Template-based protein design with Raygun☆57Updated 4 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆36Updated 11 months ago