Alternatives and similar repositories for manyfold:

Users that are interested in manyfold are comparing it to the libraries listed below

• instadeepai / protein-sequence-bfn
  Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
  ☆31Updated last month
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆148Updated last year
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆161Updated 2 years ago
• OpenBioML / protein-lm-scaling
  ☆57Updated last year
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆52Updated last year
• DeepChainBio / deepchain-apps
  A library for deploying App on deepchain.bio
  ☆30Updated 3 years ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆35Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆114Updated this week
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 6 months ago
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆59Updated last month
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆120Updated 2 years ago
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆79Updated 3 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆83Updated 7 months ago
• DeepChainBio / bio-datasets
  Free collection of Bio datasets and embeddings
  ☆35Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆110Updated 2 weeks ago
• Acellera / acegen-open
  Language models for drug discovery using torchrl
  ☆79Updated 4 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆90Updated last month
• lightonai / RITA
  RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…
  ☆96Updated 2 years ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated 10 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆106Updated 9 months ago
• AbSciBio / unlocking-de-novo-antibody-design
  ☆115Updated 7 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆88Updated 5 months ago
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆127Updated last year
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆90Updated this week
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆150Updated last year
• MJ10 / BioSeq-GFN-AL
  Code for "Biological Sequence Design with GFlowNets", 2022
  ☆73Updated 2 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆35Updated 3 years ago
• yobibyte / ml-drug-discovery-tldrs
  TLDRs for ML in Drug Discovery papers
  ☆71Updated 2 years ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆49Updated 3 months ago