instadeepai / manyfold
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
☆74Updated last year
Related projects ⓘ
Alternatives and complementary repositories for manyfold
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆145Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆93Updated last year
- Free collection of Bio datasets and embeddings☆34Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 9 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- Fitness landscape exploration sandbox for biological sequence design.☆156Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆138Updated last year
- ☆57Updated 7 months ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆80Updated 3 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…☆82Updated last month
- A library for deploying App on deepchain.bio☆28Updated 3 years ago
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆20Updated last month
- Aligning protein generative models with experimental fitness☆71Updated last month
- Attempt at reproduction of AlphaFold2☆91Updated 3 weeks ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆72Updated last year
- ☆102Updated 3 months ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆34Updated 3 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆109Updated 11 months ago
- Directed evolution of proteins in sequence space with gradients☆68Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆42Updated 3 weeks ago
- Ankh: Optimized Protein Language Model☆213Updated 10 months ago
- TLDRs for ML in Drug Discovery papers☆71Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆84Updated 3 weeks ago
- Protein Design with Guided Discrete Diffusion☆116Updated 9 months ago
- ML-guided enzyme engineering☆34Updated last week
- Improved antibody structure-based design using inverse folding☆75Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago