HKUNLP / RSALinks
Retrieved Sequence Augmentation for Protein Representation Learning
☆53Updated 2 years ago
Alternatives and similar repositories for RSA
Users that are interested in RSA are comparing it to the libraries listed below
Sorting:
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆120Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- The first large protein language model trained follows structure instructions.☆87Updated 5 months ago
- ☆42Updated 2 years ago
- This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…☆31Updated 9 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆96Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆95Updated 9 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33Updated 5 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆53Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024☆27Updated 5 months ago
- Must-read papers on NLP for science.☆58Updated 2 years ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- ☆57Updated last year
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆43Updated last year
- The code for "Learning Molecular Representation in a Cell"☆36Updated 7 months ago
- ☆12Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Updated 2 years ago
- Evolutionary Algorithm with Diffusion Models for Protein Design☆28Updated 8 months ago
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆43Updated 2 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆29Updated 2 years ago