Library for analyzing and manipulating phylogenetic trees
☆16Apr 4, 2026Updated 4 months ago
Alternatives and similar repositories for phylotreelib
Users that are interested in phylotreelib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Jun 19, 2026Updated 2 months ago
- ☆13Mar 8, 2024Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Lightweight header-only C++ library for loading and traversing trees☆25Mar 9, 2025Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R functions to work with the GMBA Inventory v2.0☆18Feb 11, 2025Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated 2 weeks ago
- A pipeline for phylogenetic diversity analysis of GBIF-mediated data☆13May 30, 2025Updated last year
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- MeShClust: an intelligent tool for clustering DNA sequences☆40Jan 14, 2022Updated 4 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jul 20, 2026Updated last month
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Scripts written for the "Finding Hidden Messages in DNA (Bioinformatics I)" course offered by UCSanDiego on Coursera.org☆11Apr 25, 2016Updated 10 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆43Apr 30, 2026Updated 4 months ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Python version of PHLAWD☆23Oct 28, 2024Updated last year
- ☆22Mar 25, 2014Updated 12 years ago
- ☆10Aug 29, 2012Updated 14 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Apr 21, 2022Updated 4 years ago
- ☆13Jun 17, 2023Updated 3 years ago
- Gene family evolution analysis of OneKP capstone paper☆13May 10, 2021Updated 5 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- A LaTeX class for Horizon Europe RIA and IA grant proposals☆17Aug 17, 2026Updated 2 weeks ago
- The malaria model☆23Aug 24, 2026Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Jul 16, 2026Updated last month
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 1, 2025Updated 8 months ago
- tree visualization for tree + annotation data☆61Jun 17, 2025Updated last year
- ☆14Sep 30, 2021Updated 4 years ago
- Browser-based utility for phylogenetic tree visualisation.☆40Jun 1, 2026Updated 2 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- organize data visualization output, automatically picking meaningful names based on semantic plotting variables☆13Apr 21, 2026Updated 4 months ago