Library for analyzing and manipulating phylogenetic trees
☆16Apr 4, 2026Updated 3 months ago
Alternatives and similar repositories for phylotreelib
Users that are interested in phylotreelib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Jun 19, 2026Updated last month
- ☆13Mar 8, 2024Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Lightweight header-only C++ library for loading and traversing trees☆25Mar 9, 2025Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R functions to work with the GMBA Inventory v2.0☆18Feb 11, 2025Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- A pipeline for phylogenetic diversity analysis of GBIF-mediated data☆13May 30, 2025Updated last year
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- MeShClust: an intelligent tool for clustering DNA sequences☆40Jan 14, 2022Updated 4 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated last year
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Scripts written for the "Finding Hidden Messages in DNA (Bioinformatics I)" course offered by UCSanDiego on Coursera.org☆11Apr 25, 2016Updated 10 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Python version of PHLAWD☆23Oct 28, 2024Updated last year
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- ☆22Mar 25, 2014Updated 12 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Apr 21, 2022Updated 4 years ago
- ☆12Jun 17, 2023Updated 3 years ago
- Gene family evolution analysis of OneKP capstone paper☆13May 10, 2021Updated 5 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- A LaTeX class for Horizon Europe RIA and IA grant proposals☆17Aug 17, 2025Updated 11 months ago
- The malaria model☆22Jul 3, 2026Updated 2 weeks ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- tree visualization for tree + annotation data☆62Jun 17, 2025Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 11 months ago
- ☆14Sep 30, 2021Updated 4 years ago
- Browser-based utility for phylogenetic tree visualisation.☆40Jun 1, 2026Updated last month
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆31Mar 11, 2026Updated 4 months ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago