Library for analyzing and manipulating phylogenetic trees
☆15Mar 21, 2026Updated last week
Alternatives and similar repositories for phylotreelib
Users that are interested in phylotreelib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Mar 22, 2026Updated last week
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- ☆12Mar 8, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Lightweight header-only C++ library for loading and traversing trees☆24Mar 9, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated last week
- R functions to work with the GMBA Inventory v2.0☆18Feb 11, 2025Updated last year
- A pipeline for phylogenetic diversity analysis of GBIF-mediated data☆13May 30, 2025Updated 10 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated 2 weeks ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- MeShClust: an intelligent tool for clustering DNA sequences☆40Jan 14, 2022Updated 4 years ago
- tree visualization for tree + annotation data☆60Jun 17, 2025Updated 9 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 8 months ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆20Mar 10, 2026Updated 2 weeks ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Scripts written for the "Finding Hidden Messages in DNA (Bioinformatics I)" course offered by UCSanDiego on Coursera.org☆11Apr 25, 2016Updated 9 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated 9 months ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆22Mar 25, 2014Updated 12 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- A LaTeX class for Horizon Europe RIA and IA grant proposals☆15Aug 17, 2025Updated 7 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Gene family evolution analysis of OneKP capstone paper☆13May 10, 2021Updated 4 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆34Jan 19, 2026Updated 2 months ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆29Aug 15, 2024Updated last year
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 4 months ago
- ☆11Dec 1, 2025Updated 3 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 2 weeks ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- organize data visualization output, automatically picking meaningful names based on semantic plotting variables☆12Feb 23, 2025Updated last year