A project to capture biological pathway data from academic papers
☆29Mar 24, 2025Updated last year
Alternatives and similar repositories for factoid
Users that are interested in factoid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 6 months ago
- Disease pathways in the human interactome☆22Mar 20, 2018Updated 8 years ago
- The purpose of Raster Fairy is to transform any kind of 2D point cloud into a regular raster whilst trying to preserve the neighborhood r…☆13Apr 18, 2017Updated 9 years ago
- Protein Structure Archiver☆16Sep 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- A web based visualization tool for process description maps in SBGN☆35Updated this week
- ☆13Feb 23, 2024Updated 2 years ago
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆25Jul 30, 2026Updated 2 months ago
- ☆27May 9, 2022Updated 4 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- ☆19Feb 5, 2026Updated 8 months ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Sep 27, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- A toolkit to quantify cell dynamics in living tissues☆13Dec 18, 2018Updated 7 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆11Jul 11, 2018Updated 8 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 7 years ago
- Transmembrane proteins predicted through Language Model embeddings☆58Feb 24, 2026Updated 7 months ago
- Bio relation extraction labeled dataset☆46Apr 15, 2022Updated 4 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 6 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆21Jun 26, 2023Updated 3 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 8 years ago
- ☆28Apr 5, 2026Updated 6 months ago
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 3 years ago
- cTPnet Package☆28Jul 12, 2022Updated 4 years ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- A curated list of awesome Molecular Modeling And Drug Discovery 🔥☆11Jul 21, 2022Updated 4 years ago
- ☆14Sep 2, 2026Updated last month
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 4 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- 🪝 What's the latest version for each database?☆31Updated this week