A project to capture biological pathway data from academic papers
☆29Mar 24, 2025Updated 11 months ago
Alternatives and similar repositories for factoid
Users that are interested in factoid are comparing it to the libraries listed below
Sorting:
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- Disease pathways in the human interactome☆23Mar 20, 2018Updated 7 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- A simple semantic search engine for scientific papers.☆28Sep 14, 2023Updated 2 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 7 years ago
- A curated list of awesome Molecular Modeling And Drug Discovery 🔥☆11Jul 21, 2022Updated 3 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last week
- ☆26May 9, 2022Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆13Jan 6, 2021Updated 5 years ago
- ☆14Oct 9, 2025Updated 4 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- A toolkit to quantify cell dynamics in living tissues☆12Dec 18, 2018Updated 7 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated 11 months ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- The purpose of Raster Fairy is to transform any kind of 2D point cloud into a regular raster whilst trying to preserve the neighborhood r…☆13Apr 18, 2017Updated 8 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- Protein Structure Archiver☆13Sep 10, 2025Updated 5 months ago
- functions and algorithms for single cell RNA-seq analyses☆12Jan 26, 2021Updated 5 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- Prediction of Protein-Small molecule binding affinities☆20Oct 1, 2025Updated 4 months ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated last month
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆136Jun 26, 2024Updated last year
- 🍊🔬 Orange add-on for gene expression of single cell data☆17Nov 28, 2025Updated 3 months ago
- The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …☆15Jan 11, 2016Updated 10 years ago
- ☆19Mar 27, 2023Updated 2 years ago
- Javascript package for embedding sequence logos☆17Jun 16, 2025Updated 8 months ago
- ☆16Nov 11, 2022Updated 3 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Jun 10, 2022Updated 3 years ago
- A web based visualization tool for process description maps in SBGN☆35Updated this week
- Transmembrane proteins predicted through Language Model embeddings☆45Updated this week
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago