clairemcwhite / vcmsa
☆29Updated last year
Alternatives and similar repositories for vcmsa:
Users that are interested in vcmsa are comparing it to the libraries listed below
- ☆22Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 3 months ago
- Feature map and function annotation of Proteins☆32Updated 10 months ago
- ☆37Updated 6 months ago
- ☆25Updated 10 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 2 months ago
- Fast protein domain structure embedding+search tool☆16Updated last week
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆34Updated last month
- Detection of remote homology by comparison of protein language model representations☆49Updated 3 months ago
- ☆20Updated 4 months ago
- ColabFold protocol☆50Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆39Updated 9 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆14Updated 2 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆21Updated 3 months ago
- A domain parser for Alphafold models☆34Updated last year
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆22Updated last week
- ☆67Updated 6 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆35Updated 6 months ago
- ☆61Updated 6 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆69Updated 4 months ago
- Biological prediction models made simple.☆41Updated this week
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆48Updated last month
- Code for LazyAF pipeline☆21Updated last year
- A tool for protein and protein complex structure prediction.☆27Updated 3 weeks ago
- DeepECtransformer☆24Updated last year
- Next generation sequence parameter library for proteins☆29Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated last week
- Machine learning prediction of enzyme optimum pH☆29Updated last month