clairemcwhite / vcmsaView external linksLinks
☆30Oct 20, 2023Updated 2 years ago
Alternatives and similar repositories for vcmsa
Users that are interested in vcmsa are comparing it to the libraries listed below
Sorting:
- ☆20May 7, 2024Updated last year
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last week
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- ☆14Sep 19, 2024Updated last year
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated last month
- ☆11Feb 13, 2024Updated 2 years ago
- ☆15May 22, 2025Updated 8 months ago
- Neural Networks for Protein Sequence Alignment☆135Nov 11, 2024Updated last year
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Nov 21, 2025Updated 2 months ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆186Updated this week
- ☆18Oct 30, 2023Updated 2 years ago
- ☆15Sep 26, 2025Updated 4 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- Protein Structure Archiver☆13Sep 10, 2025Updated 5 months ago
- This is the official repository of GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure☆37Feb 3, 2026Updated last week
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- ☆135Sep 14, 2022Updated 3 years ago
- ☆13Nov 12, 2021Updated 4 years ago
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆66Nov 9, 2025Updated 3 months ago
- ☆37Oct 16, 2024Updated last year
- Evolutionary velocity with protein language models☆97Dec 9, 2025Updated 2 months ago
- Variant call verification☆16May 12, 2025Updated 9 months ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year