clairemcwhite / vcmsaLinks
☆30Updated last year
Alternatives and similar repositories for vcmsa
Users that are interested in vcmsa are comparing it to the libraries listed below
Sorting:
- ☆70Updated last year
- Detection of remote homology by comparison of protein language model representations☆55Updated 9 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Fast protein domain structure embedding+search tool☆25Updated 2 weeks ago
- ☆43Updated last year
- ☆23Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 8 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated last month
- Biological prediction models made simple.☆44Updated 2 weeks ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Genomic language model predicts protein co-regulation and function☆81Updated 6 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆72Updated last month
- Next generation sequence parameter library for proteins☆35Updated 3 weeks ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆50Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆55Updated 5 months ago
- ☆25Updated 2 years ago
- ☆70Updated last year
- A domain parser for Alphafold models☆40Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 2 months ago
- DeepECtransformer☆28Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- ColabFold protocol☆53Updated 11 months ago
- Fast protein structure searching or your money back☆114Updated this week
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆25Updated 3 months ago
- ☆23Updated 4 months ago