Alternatives and similar repositories for IntroStatisticalGenetics

Users that are interested in IntroStatisticalGenetics are comparing it to the libraries listed below

• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆44Updated this week
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆21Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆35Updated 5 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆83Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆49Updated 3 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated this week
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 7 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated this week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated last month
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆60Updated 7 months ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆79Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆48Updated last month
• clagiamba / moloc
  ☆35Updated 4 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆58Updated 5 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆43Updated 2 months ago
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 9 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated 7 months ago