BioinformaticsToolsmith / MeShClustLinks
MeShClust: an intelligent tool for clustering DNA sequences
☆38Updated 3 years ago
Alternatives and similar repositories for MeShClust
Users that are interested in MeShClust are comparing it to the libraries listed below
Sorting:
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆91Updated last month
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆101Updated 9 months ago
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 2 weeks ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Python programs for processing GFF3 files☆98Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- ☆49Updated 7 months ago
- viralVerify: viral contig verification tool☆69Updated 3 years ago
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆59Updated this week
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆34Updated last month
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Assembled Genomes Compressor☆166Updated 7 months ago
- A package to annotate protein sequences☆58Updated 4 months ago