BioinformaticsToolsmith / MeShClustLinks
MeShClust: an intelligent tool for clustering DNA sequences
☆39Updated 3 years ago
Alternatives and similar repositories for MeShClust
Users that are interested in MeShClust are comparing it to the libraries listed below
Sorting:
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆93Updated 4 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated last year
- Variant calling tool for long-read sequencing data☆111Updated 6 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- A versatile toolkit for k-mers with taxonomic information☆79Updated 3 weeks ago
- PHAST☆75Updated last week
- BWT construction and search☆119Updated 2 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 5 months ago
- ☆45Updated 3 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 3 months ago
- ☆34Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- ☆66Updated 2 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆112Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Python programs for processing GFF3 files☆99Updated last year
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 5 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆96Updated last week
- Federating genomes with love (and synteny derived from functional annotations)☆44Updated 4 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆50Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago