BioinformaticsToolsmith / MeShClust
MeShClust: an intelligent tool for clustering DNA sequences
☆37Updated 2 years ago
Related projects: ⓘ
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated last week
- A fast tool for hybrid genome assembly of long and short reads☆74Updated 4 years ago
- viralVerify: viral contig verification tool☆65Updated 3 years ago
- Variant calling tool for long-read sequencing data☆98Updated 4 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 9 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 2 years ago
- Error correction for Illumina RNA-seq reads☆62Updated 6 months ago
- List of genome assembly tools☆44Updated 2 weeks ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆66Updated 2 years ago
- A fork of exonerate: a generic tool for sequence alignment☆60Updated 9 months ago
- Fast and flexible ORF finder☆54Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆67Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆55Updated 10 months ago
- A tool for Racon polishing of miniasm assemblies☆72Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆78Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆85Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆112Updated last month
- ☆43Updated 3 weeks ago
- 🔗Genome assembly scaffolder using minimizer graphs☆81Updated this week
- ☆114Updated 3 weeks ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Yet another k-mer analyzer☆112Updated 5 months ago
- Research release basecalling models and configurations☆102Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- ClairS - a deep-learning method for long-read somatic small variant calling☆67Updated last month
- A versatile toolkit for k-mers with taxonomic information☆74Updated last month
- Aligns short reads using dynamic seed size with strobemers☆141Updated this week