BioinformaticsToolsmith / MeShClust
MeShClust: an intelligent tool for clustering DNA sequences
β37Updated 2 years ago
Related projects β
Alternatives and complementary repositories for MeShClust
- πScaffold genome sequence assemblies using linked or long read sequencing dataβ92Updated 2 weeks ago
- a tool for inferring species tree from sequencing readsβ144Updated last week
- Estimating k-mer coverage histogram of genomics dataβ76Updated 11 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome readsβ44Updated 2 years ago
- Error correction for Illumina RNA-seq readsβ63Updated 8 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etβ¦β83Updated last month
- Reference-guided multiple sequence alignment of viral genomesβ61Updated 2 months ago
- Variant calling tool for long-read sequencing dataβ101Updated last week
- A tool to identify, orient, trim and rescue full length cDNA readsβ81Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ88Updated 3 years ago
- Yet another k-mer analyzerβ115Updated 7 months ago
- GenMap - Fast and Exact Computation of Genome Mappabilityβ100Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ57Updated last year
- A Strategy for Building and Using a Human Reference Pangenomeβ70Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.β117Updated 2 weeks ago
- A tool for somatic structural variant calling using long readsβ105Updated 2 weeks ago
- Aligns short reads using dynamic seed size with strobemersβ150Updated this week
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing longβ¦β66Updated 4 years ago
- Pairwise whole genome alignerβ140Updated this week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/nβ¦β67Updated 2 years ago
- De novo genome assembly and multisample variant callingβ113Updated 5 years ago
- RNA modifications detection from Nanopore dRNA-Seq dataβ80Updated 10 months ago
- πGenome assembly scaffolder using minimizer graphsβ83Updated last month
- β43Updated last month
- viralVerify: viral contig verification toolβ66Updated 3 years ago
- Dfam Transposable Element Tools Docker container.β85Updated last month
- Python programs for processing GFF3 filesβ95Updated 7 months ago
- β Long Interval Nucleotide K-mer Scaffolderβ73Updated 11 months ago
- A repository for generating strobemers and evalautionβ77Updated 7 months ago
- Fast and flexible ORF finderβ62Updated 2 years ago