phglab / ALFATClustLinks
Biological sequence clustering tool with dynamic threshold
☆26Updated last year
Alternatives and similar repositories for ALFATClust
Users that are interested in ALFATClust are comparing it to the libraries listed below
Sorting:
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- ☆39Updated last month
- PHANOTATE: a gene caller for phages.☆78Updated 7 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- ☆30Updated 6 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆43Updated 2 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆18Updated 5 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Updated 6 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 5 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆40Updated last week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 11 months ago
- ☆30Updated this week