phglab / ALFATClust
Biological sequence clustering tool with dynamic threshold
☆24Updated last year
Alternatives and similar repositories for ALFATClust:
Users that are interested in ALFATClust are comparing it to the libraries listed below
- Pipeline for major biological analyses.☆34Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- ☆38Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆38Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆41Updated 3 weeks ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Supplementary data for co-occurrence manuscript☆10Updated 5 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆43Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- Detection of phage RBPs based on protein domains and machine learning☆21Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated 2 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆46Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- PHANOTATE: a tool to annotate phage genomes.☆72Updated last month
- Viral protein family functional prediction using protein language models☆18Updated 8 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆20Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆30Updated last month
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆58Updated 2 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆30Updated 3 weeks ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆25Updated 2 years ago
- ☆19Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆16Updated this week