Alternatives and similar repositories for acidbio:

Users that are interested in acidbio are comparing it to the libraries listed below

• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 7 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆18Updated this week
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆31Updated this week
• InscriptaLabs / BioCantor
  ☆21Updated last year
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆24Updated 5 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆60Updated this week
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆18Updated this week
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆45Updated 2 years ago
• hoffmangroup / segway
  Application for semi-automated genomic annotation.
  ☆14Updated 7 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆31Updated 5 months ago
• mcfrith / dnarrange
  ☆16Updated last month
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 7 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 3 months ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 2 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated 3 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 5 years ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆45Updated 6 months ago