hoffmangroup / acidbioLinks
☆14Updated 3 years ago
Alternatives and similar repositories for acidbio
Users that are interested in acidbio are comparing it to the libraries listed below
Sorting:
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 5 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Annotating principal splice isoforms☆17Updated 2 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated 4 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last month
- BED QC tool (in the making)☆17Updated 3 years ago
- Customer workshop materials☆19Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆29Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- The command-line interface to GGD☆43Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- sort genomic data☆36Updated 2 months ago
- ☆22Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago