☆14Jun 3, 2022Updated 4 years ago
Alternatives and similar repositories for acidbio
Users that are interested in acidbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Dec 26, 2025Updated 10 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Aug 16, 2026Updated 2 months ago
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 3 weeks ago
- Generic SDK and CLI for GA4GH API services☆15Sep 24, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- Variant call verification☆19May 12, 2025Updated last year
- SNAPPY Nucleic Acid Processing in Python☆10Oct 26, 2026Updated last week
- ☆11Jul 31, 2019Updated 7 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The CICA/IoA HPC cluster☆17Jun 5, 2020Updated 6 years ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆52Updated this week
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Updated this week
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- ☆13Oct 24, 2026Updated 2 weeks ago
- Structural variant benchmark☆25Mar 4, 2025Updated last year
- BitSeq code☆16Jun 21, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆16May 15, 2023Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- cython + htslib == fast VCF and BCF processing☆451Updated this week
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Aug 10, 2017Updated 9 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 8 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Aug 17, 2020Updated 6 years ago
- Faster than s3cp☆37Apr 20, 2022Updated 4 years ago
- Analytics toolkit for Illumina sequencer metrics.☆12Aug 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rocking R at UMCCR☆10Oct 11, 2020Updated 6 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆296Jun 10, 2026Updated 4 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 4 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Transcript quantification import with automatic metadata detection☆72Oct 25, 2026Updated last week