hoffmangroup / acidbio
☆14Updated 2 years ago
Alternatives and similar repositories for acidbio:
Users that are interested in acidbio are comparing it to the libraries listed below
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- ☆21Updated last year
- Fast sequencing data quality metrics☆17Updated 2 weeks ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆16Updated this week
- Complex structural variant visualization for HiFi sequencing data☆27Updated 2 months ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Application for semi-automated genomic annotation.☆13Updated 6 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆25Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆21Updated this week
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 7 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- convert CHAIN format to PAF format☆14Updated last month
- ☆16Updated this week
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- ☆13Updated last year