hoffmangroup / acidbioLinks
☆14Updated 3 years ago
Alternatives and similar repositories for acidbio
Users that are interested in acidbio are comparing it to the libraries listed below
Sorting:
- Fast sequencing data quality metrics☆28Updated last month
- ☆22Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- sort genomic data☆36Updated 5 years ago
- vembrane filters VCF records using python expressions☆64Updated 2 weeks ago
- ☆26Updated 6 years ago
- Complex structural variant visualization for HiFi sequencing data☆37Updated 2 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 4 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- The command-line interface to GGD☆42Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago