hoffmangroup / acidbio
☆14Updated 2 years ago
Alternatives and similar repositories for acidbio:
Users that are interested in acidbio are comparing it to the libraries listed below
- Fast sequencing data quality metrics☆25Updated this week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- ☆21Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆23Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- CADD-SV – a framework to score the effect of structural variants☆14Updated last week
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated this week
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆19Updated last month
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated last month
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- ☆16Updated 2 months ago
- vembrane filters VCF records using python expressions☆58Updated last week
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago