hoffmangroup / acidbio
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for acidbio
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Fast sequencing data quality metrics☆16Updated 3 weeks ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆12Updated this week
- ☆21Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 2 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Population-wide Deletion Calling☆34Updated 2 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆32Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated last week
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆25Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆44Updated 2 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Deep learning-based structural variant filtering method☆35Updated 11 months ago
- vembrane filters VCF records using python expressions☆57Updated last month
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- ☆15Updated 6 months ago