Phylogenetic tree viewer based on D3.js
☆61Aug 16, 2024Updated last year
Alternatives and similar repositories for phyd3
Users that are interested in phyd3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Uncompromisingly Flexible Phylogenetic Trees in Javascript☆23Feb 26, 2026Updated last month
- 📊 Unipept visualisations, packaged for easy reusability☆20Feb 25, 2026Updated last month
- ☆22May 24, 2016Updated 9 years ago
- Browser-based utility for phylogenetic tree visualisation.☆40Feb 4, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Phylo.IO JS tree viewer☆36Jan 21, 2026Updated 2 months ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- ☆11Apr 17, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated last month
- Interactive viewer of phylogenetic trees☆198Mar 26, 2026Updated 2 weeks ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.☆21Mar 5, 2023Updated 3 years ago
- A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)☆18Apr 1, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 8 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- HiC contact matrix visualization☆23Mar 22, 2026Updated 2 weeks ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 7 months ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated 3 weeks ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated 2 months ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 3 years ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Federating genomes with love (and synteny derived from functional annotations)☆45Mar 20, 2026Updated 3 weeks ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- ☆15Dec 27, 2022Updated 3 years ago
- Modular BioJS compoment for a multiple sequence alignment☆173May 22, 2022Updated 3 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- ☆13Apr 2, 2026Updated last week
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Nov 24, 2025Updated 4 months ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- ☆21Jan 29, 2024Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago