schatzlab / biomedicalresearch2021Links
Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
☆13Updated 3 years ago
Alternatives and similar repositories for biomedicalresearch2021
Users that are interested in biomedicalresearch2021 are comparing it to the libraries listed below
Sorting:
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Construct a Physical Map from Linked Reads☆18Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Population genetics analysis on VG☆17Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 4 months ago
- ☆28Updated last month
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated last year
- Manipulate and generate figures for trees in Newick format☆22Updated 4 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Updated 3 years ago