GSFetch is a powerful shell script designed to facilitate the batch downloading of genomic data using ncbi-datasets
☆10Jan 15, 2026Updated 9 months ago
Alternatives and similar repositories for gsfetch
Users that are interested in gsfetch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🚀 Building a Streamlit boilerplate with Streamlit, SQLite DB, and REST API.☆25Mar 6, 2025Updated last year
- cool text fluid effect for your website☆10Jan 22, 2024Updated 2 years ago
- Automated pipeline for enrichment analysis in non-model organisms !☆17Feb 8, 2026Updated 8 months ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Simple bash file / python file to install a lot of packages that can sometimes not come with the vps or cannot be installed☆23Jul 26, 2024Updated 2 years ago
- editable svelte website with bluesky pds as backend☆13May 8, 2025Updated last year
- ☆11Jan 8, 2026Updated 9 months ago
- NGS perl modules☆10Updated this week
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 7 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Wrapper scripts to run genome assembly scaffolding tools and scripts to analyse the output for accuracy.☆11Mar 16, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- ☆11Oct 8, 2018Updated 8 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniqu…☆12Jan 26, 2019Updated 7 years ago
- Simple R script for plotting ideograms and annotating with bed files.☆13Sep 21, 2015Updated 11 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- ☆15Aug 6, 2018Updated 8 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago
- Ruby library for handling GFA files☆17Jul 10, 2025Updated last year
- B-cell Hybrid Immune Variant Engine☆12Oct 16, 2026Updated last week
- testing where SNP are in the humain genom☆13Oct 24, 2016Updated 10 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆14Aug 21, 2024Updated 2 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 10 years ago
- Terminal Script for OpenAI and OpenRouter API models. Let's make this a functional performing script.☆16Jul 12, 2026Updated 3 months ago
- Scripts to reproduce TrioBinning manuscript☆18Mar 31, 2020Updated 6 years ago
- Template for a streamlit webapp with multipage☆17Jun 22, 2022Updated 4 years ago
- Transcript to Genome Consistency Network☆16Jun 19, 2012Updated 14 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago