ebiggers / flashLinks
FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code
☆12Updated 7 years ago
Alternatives and similar repositories for flash
Users that are interested in flash are comparing it to the libraries listed below
Sorting:
- A program for detection of tRNA genes☆80Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Tiberius is a deep learning gene finder.☆90Updated this week
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Updated this week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- ☆39Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated 2 weeks ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Phylogenetic orthology inference for comparative genomics☆89Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- a tool for inferring species tree from sequencing reads☆156Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Development version of Easyfig☆102Updated 2 years ago
- paml documentation and tutorials☆66Updated this week
- Exploring the "dusk matter" of the RNA virosphere☆36Updated 3 years ago
- NLR annotation tool☆35Updated last year
- Scripting analyses of genomes in Ensembl Plants☆41Updated 2 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- A fully automated gene annotator from RNA-Seq expression data☆61Updated 2 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆50Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆109Updated 7 months ago
- Best practices and workflow for genome annotation☆79Updated 9 months ago
- ☆32Updated 2 years ago
- collection of bioinformatic scripts☆31Updated last year
- A list of awesome awesomeness related to bioinformatics and associated fields☆42Updated 9 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago