FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code
☆13Mar 6, 2018Updated 8 years ago
Alternatives and similar repositories for flash
Users that are interested in flash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- RNA-seq, QC and differential analysis pipeline☆17Apr 7, 2026Updated 3 weeks ago
- Gene copy number prediction from k-mer frequencies☆16Apr 15, 2026Updated 2 weeks ago
- ☆75Mar 10, 2024Updated 2 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆21Feb 21, 2025Updated last year
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆92May 3, 2025Updated 11 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆22Dec 11, 2024Updated last year
- ☆12Oct 3, 2023Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Apr 23, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆21Jul 15, 2025Updated 9 months ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- various sources and scripts for genomic research software☆10May 11, 2015Updated 10 years ago
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- ☆11Oct 6, 2025Updated 6 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Notebooks for CPA figures☆14Dec 9, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Mar 17, 2022Updated 4 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- R package for DER Finder, a method for differential expression analysis of RNA-seq data☆22Mar 6, 2015Updated 11 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆24May 19, 2020Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Eukaryotic genome annotation software.☆25Apr 22, 2026Updated last week
- ☆66Dec 9, 2020Updated 5 years ago
- A tool for visualising kmers in 2D space.☆14Feb 23, 2025Updated last year
- ☆26Oct 17, 2018Updated 7 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆23Jun 6, 2023Updated 2 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago