use pangenome of different assemblies for same sample to make patched assembly
☆12Nov 6, 2026Updated this week
Alternatives and similar repositories for panpatch
Users that are interested in panpatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to annotate inversions from pangenome graph bubbles.☆11Jun 26, 2026Updated 4 months ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Updated this week
- Utilities to manipulate pangenome collections using multi-MUMs☆20Updated this week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Pangenome structural variation (SV) merging and deduplication☆11Oct 10, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- ☆10Oct 16, 2026Updated 3 weeks ago
- ☆43Oct 6, 2025Updated last year
- Predict 3D genome structure from Fiber-seq data.☆13Aug 5, 2025Updated last year
- ☆10Nov 3, 2026Updated last week
- ☆25Sep 22, 2026Updated last month
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆30Oct 20, 2026Updated 2 weeks ago
- A "dot"-plot style viewer for .1aln files☆11Mar 17, 2026Updated 7 months ago
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆22Oct 8, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆63Sep 6, 2025Updated last year
- ☆32Oct 7, 2026Updated last month
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Updated this week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Multiple sequence alignment of long tandem repeats☆34Updated this week
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- The Arabidopsis pancentromere evolves through rapid cycles of satellite homogenization and centrophilic ATHILA retrotransposon invasion☆10Apr 29, 2023Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Misassembly Identifier☆29Oct 29, 2026Updated last week
- Genome-in-a-Bottle stratifications for major references☆16Apr 28, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- base-level dotplots from PAF alignments☆36Oct 25, 2026Updated 2 weeks ago
- ANI based satellite annotation☆31Aug 6, 2026Updated 3 months ago
- ☆10Nov 20, 2025Updated 11 months ago
- Statistics and analysis for variation graphs☆57Dec 17, 2024Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convert HAL to VG☆24Oct 30, 2026Updated last week
- gearTool☆14Jun 29, 2025Updated last year
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- TR annotation tool VAMPIRE☆20Sep 2, 2026Updated 2 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆19Oct 26, 2026Updated 2 weeks ago
- Evaluating genome assemblies☆132Updated this week
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
Are these results useful?