The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
☆38Apr 13, 2024Updated last year
Alternatives and similar repositories for cgview_comparison_tool
Users that are interested in cgview_comparison_tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- CGView.js creates interactive circular and linear genome maps.☆45Updated this week
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆51Mar 2, 2026Updated 3 weeks ago
- Biological sequence clustering tool with dynamic threshold☆27Oct 2, 2023Updated 2 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆24Mar 10, 2026Updated last week
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- Multi-genome synteny block visualization tool☆55Updated this week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- ☆25Apr 20, 2023Updated 2 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆46Apr 24, 2024Updated last year
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆171Apr 16, 2025Updated 11 months ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated 11 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated this week
- An R package designed for drawing gene arrow maps☆97Sep 29, 2025Updated 5 months ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- ☆33Apr 15, 2024Updated last year
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 9 months ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆26May 21, 2025Updated 10 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- Bioinformatics tool for Locus Visualisation☆162Mar 11, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Protein orthologous group assignment with deep learning☆28Dec 16, 2025Updated 3 months ago