BIMSBbioinfo / jangguLinks
Deep learning infrastructure for genomics
☆257Updated 4 years ago
Alternatives and similar repositories for janggu
Users that are interested in janggu are comparing it to the libraries listed below
Sorting:
- Model zoo for genomics☆172Updated last year
- a framework for training sequence-level deep learning networks☆390Updated 11 months ago
- Kipoi's model zoo API☆239Updated last year
- TF MOtif Discovery from Importance SCOres☆158Updated last month
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆169Updated 2 months ago
- Unified biological sequence manipulation in Python☆207Updated last year
- Contains files for the deep learning in genomics primer.☆267Updated 6 years ago
- dna2vec: Consistent vector representations of variable-length k-mers☆191Updated 3 years ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated last week
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆309Updated last month
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆458Updated 6 months ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 10 months ago
- Biological sequence analysis for the modern age.☆257Updated last month
- Training and testing of DeepBind models.☆101Updated 10 years ago
- genes and genomes at your fingertips☆404Updated 2 months ago
- Peptide-MHC I binding affinity prediction☆221Updated 6 months ago
- ☆69Updated 2 years ago
- ☆107Updated 7 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Updated last year
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆252Updated 9 months ago
- A deep learning-based tool to identify splice variants☆474Updated 4 months ago
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago