Alternatives and similar repositories for kipoi

Users that are interested in kipoi are comparing it to the libraries listed below

• kipoi / models
  Model zoo for genomics
  ☆166Updated 10 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 3 years ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆138Updated last year
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆382Updated 5 months ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆154Updated 10 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆127Updated 4 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆237Updated last month
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆260Updated last year
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆395Updated last year
• greenelab / tybalt
  Training and evaluating a variational autoencoder for pan-cancer gene expression data
  ☆170Updated 6 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆129Updated 2 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆119Updated 3 years ago
• NVIDIA-Genomics-Research / rapids-single-cell-examples
  Examples of single-cell genomic analysis accelerated with RAPIDS
  ☆337Updated 2 years ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆231Updated 4 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 9 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆223Updated 3 weeks ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆471Updated 2 months ago
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆260Updated 4 years ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆231Updated this week
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆185Updated 2 years ago
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆244Updated 4 years ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆158Updated 8 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆170Updated last year
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆113Updated 3 years ago
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆146Updated 5 years ago
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆335Updated last week
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆223Updated last month
• chanzuckerberg / scRNA-python-workshop
  All the action is on the course webpage -->
  ☆29Updated 6 months ago