kipoi / kipoiView external linksLinks
Kipoi's model zoo API
☆240Dec 17, 2025Updated last month
Alternatives and similar repositories for kipoi
Users that are interested in kipoi are comparing it to the libraries listed below
Sorting:
- Model zoo for genomics☆173Dec 17, 2025Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- a framework for training sequence-level deep learning networks☆397Dec 16, 2024Updated last year
- A repository to host extended examples and tutorials.☆11Dec 17, 2025Updated last month
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 6 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 4 years ago
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Python and C++ code for reading and writing genomics data.☆799Dec 9, 2021Updated 4 years ago
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,274Dec 25, 2022Updated 3 years ago
- TF MOtif Discovery from Importance SCOres☆165Dec 14, 2025Updated 2 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Cloud-native genomic dataframes and batch computing☆1,048Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆462Jan 15, 2026Updated 3 weeks ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Oct 22, 2019Updated 6 years ago
- A list of deep learning implementations in biology☆2,118Jan 2, 2026Updated last month
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Jan 28, 2025Updated last year
- Simple and efficient access to genomic data for deep learning models.☆42Jan 9, 2020Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Oct 9, 2023Updated 2 years ago
- SV☆14May 3, 2018Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Jan 29, 2026Updated 2 weeks ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Dec 4, 2025Updated 2 months ago
- ☆21Jul 6, 2023Updated 2 years ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- Linear mixed model for genomic analyses.☆118May 21, 2021Updated 4 years ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated last year
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Feb 26, 2019Updated 6 years ago
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated last week
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated last week