etirouthier / keras_dnaLinks
☆25Updated 4 years ago
Alternatives and similar repositories for keras_dna
Users that are interested in keras_dna are comparing it to the libraries listed below
Sorting:
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆34Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- Python package to analyze DNA methylation data☆44Updated 3 weeks ago
- Interactive tutorials for using scikit-bio in biological research☆27Updated 2 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆44Updated 9 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆52Updated this week
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆43Updated 6 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆68Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- ☆39Updated 3 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆13Updated 2 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated 11 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 9 months ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Updated 4 years ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- pathway based data integration and visualization☆41Updated 6 months ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆28Updated 7 years ago