etirouthier / keras_dna
☆23Updated 4 years ago
Alternatives and similar repositories for keras_dna:
Users that are interested in keras_dna are comparing it to the libraries listed below
- ☆33Updated 2 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 9 months ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated last year
- Python package to analyze DNA methylation data☆40Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 3 weeks ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated last month
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated 11 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated this week
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆57Updated last year
- ☆34Updated 5 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆35Updated 2 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- A python package and a set of shell commands to handle GTF files☆46Updated 8 months ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Comprehensive and scalable differential splicing analyses☆14Updated this week
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 2 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- A short tutorial to using DL and keras for genomics with sequence data.☆15Updated 4 years ago