A python library for creating simulated regulatory DNA sequences
☆40Feb 22, 2023Updated 3 years ago
Alternatives and similar repositories for simdna
Users that are interested in simdna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆110Jun 23, 2026Updated last month
- Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors☆13Aug 13, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TF MOtif Discovery from Importance SCOres☆188Updated this week
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆53Aug 13, 2024Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆75Apr 28, 2023Updated 3 years ago
- An Efficient DNA Clustering algorithm based on Tree Structure.☆19Mar 28, 2023Updated 3 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- ☆11Oct 6, 2017Updated 8 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆23Nov 18, 2024Updated last year
- Getting started guide to using GPUs for nCoV2019 research☆14Apr 24, 2020Updated 6 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 9 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- ☆19Oct 21, 2024Updated last year
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- ☆11Jul 21, 2021Updated 5 years ago
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆51Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- deep learning-inspired explainable sequence model for transcription initiation☆106Mar 3, 2025Updated last year
- Latent Diffusion Model for DNA Sequence Generation☆34Oct 30, 2024Updated last year
- A toolkit to learn how to model and interpret regulatory sequence data using deep learning.☆264Aug 1, 2023Updated 3 years ago
- Data for paper "Random Access in Large-Scale DNA Data Storage"☆12Jan 11, 2018Updated 8 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 9 months ago
- DeepSEA in TensorFlow☆32May 24, 2017Updated 9 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 2 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated 2 weeks ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 5 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- ☆11Mar 16, 2020Updated 6 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆182Mar 19, 2026Updated 4 months ago
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year