kundajelab / simdnaLinks
A python library for creating simulated regulatory DNA sequences
☆38Updated 2 years ago
Alternatives and similar repositories for simdna
Users that are interested in simdna are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- ☆33Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 9 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆27Updated this week
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 4 months ago
- ☆23Updated 4 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Knowledge-primed neural networks☆37Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago