kundajelab / simdna
A python library for creating simulated regulatory DNA sequences
☆38Updated 2 years ago
Alternatives and similar repositories for simdna:
Users that are interested in simdna are comparing it to the libraries listed below
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 11 months ago
- ☆37Updated last year
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 6 months ago
- ☆33Updated 2 years ago
- Knowledge-primed neural networks☆35Updated last year
- ☆23Updated 4 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated last month
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆28Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆72Updated 8 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆57Updated last year
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- ☆18Updated 11 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆68Updated 3 months ago
- ☆24Updated 11 months ago
- HLA-II ligand predictor.☆41Updated last year
- ☆9Updated 9 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- ☆65Updated 3 weeks ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago