Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
☆51Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for maui
Users that are interested in maui are comparing it to the libraries listed below
Sorting:
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Mar 7, 2018Updated 8 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated last month
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- ☆14Jul 5, 2022Updated 3 years ago
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- Multi-Omics Factor Analysis☆260Sep 30, 2020Updated 5 years ago
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Feb 5, 2021Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Jan 6, 2022Updated 4 years ago
- Multi-omics integration method using AE and GCN☆39Jun 7, 2023Updated 2 years ago
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- ☆12May 17, 2022Updated 3 years ago
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Nov 17, 2025Updated 3 months ago
- ☆10Oct 12, 2021Updated 4 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Code for our paper Re-balancing Variational Autoencoder Loss for Molecule Sequence Generation.☆11Sep 4, 2022Updated 3 years ago
- ☆10Nov 10, 2023Updated 2 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆10Oct 20, 2020Updated 5 years ago
- Toolbox package for organizing and working with TCGA data☆28Dec 11, 2025Updated 2 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- A deep-learning framework for multi-omics integration☆32Jul 6, 2023Updated 2 years ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- An python omics data toolkit for the analysis across biological scales☆11Dec 5, 2023Updated 2 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆15Apr 15, 2025Updated 10 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- Deep-Learning framework for multi-omic and survival data integration☆86Dec 20, 2023Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Oct 26, 2024Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Sep 22, 2020Updated 5 years ago
- Collection of search spaces for hyperparameter optimization in the mlr3 ecosystem