the-ouyang-lab / ShinyCell2Links
ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.
☆37Updated 4 months ago
Alternatives and similar repositories for ShinyCell2
Users that are interested in ShinyCell2 are comparing it to the libraries listed below
Sorting:
- Create stacked violin plot☆51Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- A R package for advanced single cell data viz☆68Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆106Updated last year
- ☆62Updated 6 years ago
- ☆73Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆127Updated 2 months ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆81Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- R package for semi-supervised single-cell data integration☆90Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- ☆115Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆145Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆126Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆73Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Various utility functions for Seurat single-cell analysis☆53Updated 3 weeks ago
- ☆86Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆134Updated 3 months ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago