the-ouyang-lab / ShinyCell2Links
ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.
☆33Updated 3 months ago
Alternatives and similar repositories for ShinyCell2
Users that are interested in ShinyCell2 are comparing it to the libraries listed below
Sorting:
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- Create stacked violin plot☆51Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆28Updated 4 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆122Updated last month
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆80Updated last year
- A R package for advanced single cell data viz☆68Updated 3 weeks ago
- ☆71Updated 2 years ago
- ☆62Updated 6 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- ☆70Updated 3 years ago
- ☆115Updated 2 weeks ago
- ☆71Updated last year
- Various utility functions for Seurat single-cell analysis☆53Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆125Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- ☆85Updated 2 weeks ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Methods for decontamination of single cell data☆47Updated 7 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 10 months ago