ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.
☆71Jun 1, 2025Updated last year
Alternatives and similar repositories for ShinyCell2
Users that are interested in ShinyCell2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shiny Interactive Web Apps for Single-Cell Data☆218Apr 24, 2025Updated last year
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 4 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆675Mar 11, 2026Updated 6 months ago
- The scripts used for analyzing JAX mouse dataset☆28Oct 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆674Mar 4, 2026Updated 6 months ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- ☆10Jul 10, 2024Updated 2 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆318Updated this week
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Updated this week
- ☆36Oct 22, 2025Updated 11 months ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- ☆231Jun 13, 2026Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆122Aug 24, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆16Aug 15, 2024Updated 2 years ago
- 10x Genomics analysis guides files☆47Updated this week
- ☆35Jun 15, 2026Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆19Aug 12, 2022Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 6 months ago
- ☆22May 12, 2026Updated 4 months ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆14Mar 11, 2024Updated 2 years ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- ☆13Jun 18, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 8 months ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- reticulate-free single cell format conversion☆221Jul 10, 2026Updated 2 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆127Updated this week
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 months ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆15Oct 11, 2021Updated 4 years ago
- ☆102Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆58Jan 12, 2024Updated 2 years ago
- ☆467Updated this week
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- ☆12May 24, 2024Updated 2 years ago
- ☆20Jan 23, 2026Updated 8 months ago
- Methods to discover gene programs on single-cell data☆211Sep 18, 2026Updated last week