BCH-RC / TDNAscanLinks
TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions
☆19Updated 2 years ago
Alternatives and similar repositories for TDNAscan
Users that are interested in TDNAscan are comparing it to the libraries listed below
Sorting:
- Application of pan-genome for population☆113Updated this week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Hi-C data processing pipeline☆37Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 6 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 8 months ago
- tutorial on pggb☆35Updated 9 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Best practices and workflow for genome annotation☆78Updated 6 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- PacBio BAM toolkit☆46Updated 8 months ago
- tomato graph pangenome☆84Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆48Updated this week
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- SRF: Satellite Repeat Finder☆98Updated last year
- python plotly Circos from VCF☆40Updated last year
- source code for EVM☆118Updated 10 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- ☆65Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago