BCH-RC / TDNAscan
TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions
☆17Updated last year
Alternatives and similar repositories for TDNAscan:
Users that are interested in TDNAscan are comparing it to the libraries listed below
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆39Updated 2 months ago
- ☆42Updated 8 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 9 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated this week
- perSVade: personalized Structural Variation detection☆38Updated last month
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆34Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- PacBio BAM toolkit☆39Updated 2 months ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 8 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- ☆28Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- ☆28Updated 2 weeks ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆21Updated 6 months ago
- ☆24Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year