TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions
☆20Oct 22, 2023Updated 2 years ago
Alternatives and similar repositories for TDNAscan
Users that are interested in TDNAscan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jan 11, 2019Updated 7 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆10Aug 27, 2023Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Jun 26, 2024Updated last year
- ☆16Jun 30, 2022Updated 3 years ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆66Updated this week
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 9 months ago
- ☆29Jul 16, 2022Updated 3 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)☆10Aug 14, 2018Updated 7 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Browser-based GUI HDF Viewer https://broh5.readthedocs.io☆13Dec 26, 2025Updated 3 months ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 4 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆11Dec 10, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆22Aug 6, 2024Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Feb 3, 2026Updated last month
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- Plant breeding simulations with AlphaSimR☆27Jan 5, 2025Updated last year
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆48May 26, 2025Updated 10 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Repository for code used for publications☆30Oct 20, 2025Updated 5 months ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago