Alternatives and similar repositories for TDNAscan

Users that are interested in TDNAscan are comparing it to the libraries listed below

• Uauy-Lab / pangenome-haplotypes

  View on GitHub
  Scripts to do haplotype analysis on pan genomes.
  ☆20Sep 24, 2020Updated 5 years ago
• mglev1n / locusplotr

  View on GitHub
  Create Regional Association Plots
  ☆13Sep 7, 2025Updated 5 months ago
• YuSugihara / MutMap

  View on GitHub
  MutMap pipeline to identify causative mutations responsible for a phenotype
  ☆65Jan 31, 2025Updated last year
• cran / rrBLUP

  View on GitHub
   This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…
  ☆14Dec 11, 2023Updated 2 years ago
• HighlanderLab / jbancic_alphasimr_plants

  View on GitHub
  Plant breeding simulations with AlphaSimR
  ☆27Jan 5, 2025Updated last year
• c-zhou / polyGembler

  View on GitHub
  ☆16Jun 30, 2022Updated 3 years ago
• amvarani / Plant_Annotation_TEs

  View on GitHub
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Jun 10, 2025Updated 8 months ago
• annaprotasio / TE_ManAnnot

  View on GitHub
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Jun 26, 2024Updated last year
• shingocat / syntenyPlotByR

  View on GitHub
  plot genome alignment synteny
  ☆21May 25, 2020Updated 5 years ago
• ShiuLab / Manuscript_Code

  View on GitHub
  Repository for code used for publications
  ☆30Oct 20, 2025Updated 3 months ago
• xiekunwhy / bsa

  View on GitHub
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆32Dec 20, 2024Updated last year
• lardo / khaper

  View on GitHub
  ☆29Jul 16, 2022Updated 3 years ago
• ellenbell / FasTE

  View on GitHub
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Dec 7, 2022Updated 3 years ago
• Zhuxitong / ppsPCP

  View on GitHub
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆28May 24, 2021Updated 4 years ago
• miguelperezenciso / SeqBreed

  View on GitHub
  A python tool to evaluate genomic prediction in complex scenarios
  ☆37Oct 18, 2022Updated 3 years ago
• ZhiGroup / RaPID

  View on GitHub
  ☆32Dec 3, 2021Updated 4 years ago
• Breeding-Analytics / bioflow

  View on GitHub
  ☆11Feb 6, 2026Updated last week
• kora-labs / chromax

  View on GitHub
  Chromax is a breeding simulator based on JAX.
  ☆10Jun 6, 2025Updated 8 months ago
• StevenBtw / solvOR

  View on GitHub
  Optimization solvers in pure Python: LP, MILP, SAT, constraint programming, graph and metaheuristics. No dependencies. Solvor all your op…
  ☆25Feb 1, 2026Updated last week
• everest-castaneda / knext

  View on GitHub
  Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…
  ☆11May 8, 2024Updated last year
• uc-cdis / pypfb

  View on GitHub
  Python library & CLI to create, view and edit PFB files
  ☆12Updated this week
• Deep-Breeding / GEFormer

  View on GitHub
  GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…
  ☆14Jan 15, 2026Updated 3 weeks ago
• zengxi-hada / HIVID2

  View on GitHub
  HIVID2 is a tool for detecting virus integration events in the host genome.
  ☆12Oct 1, 2023Updated 2 years ago
• bioinformatics-ptp / detectRUNS

  View on GitHub
  detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
  ☆12May 25, 2023Updated 2 years ago
• adamavip / fatty_acid_nirs_model

  View on GitHub
  Using near-infrared spectroscopy (NIRS) and machine learning to determine oleic acid content from peanut raw grains
  ☆12Apr 6, 2022Updated 3 years ago
• arthurkorte / MTMM

  View on GitHub
  ☆11Aug 20, 2019Updated 6 years ago
• isabelschober / proteinortho_curves

  View on GitHub
  Draw pan- and core-genome curves from proteinortho output
  ☆10Oct 26, 2023Updated 2 years ago
• SJTU-CGM / CDKAM

  View on GitHub
  ☆11Feb 16, 2021Updated 4 years ago
• jackchuka / mdschema

  View on GitHub
  📝 A declarative schema-based Markdown validator that helps maintain consistent documentation structure across projects.
  ☆42Feb 6, 2026Updated last week
• sheppardlab / pGWAS

  View on GitHub
  pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria
  ☆11Feb 6, 2018Updated 8 years ago
• xoniks / mcp-visualization-duckdb

  View on GitHub
  Transform natural language into beautiful, interactive data visualizations using the Model Context Protocol (MCP) with Claude Desktop int…
  ☆15Jun 27, 2025Updated 7 months ago
• vborjesson / TC_hunter

  View on GitHub
  Locate transgenic insertion sites
  ☆11Mar 14, 2023Updated 2 years ago
• sfli001 / T-LOC

  View on GitHub
  ☆10Aug 27, 2023Updated 2 years ago
• chenqumi / LepMAP3

  View on GitHub
  scripts for a Genetics Map software
  ☆11Jan 7, 2018Updated 8 years ago
• resend / resend-webhooks-ingester

  View on GitHub
  A boilerplate example on how to ingest Resend's webhooks and send them to your preferred database
  ☆29Feb 3, 2026Updated last week
• LiLabAtVT / DeepTE

  View on GitHub
  Neural network classification of TE
  ☆97Oct 9, 2025Updated 4 months ago
• azodichr / GenomicPrediction_2018

  View on GitHub
  Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy
  ☆12Apr 2, 2018Updated 7 years ago
• retyui / clean-css-loader

  View on GitHub
  CleanCSS loader module for webpack
  ☆11Jan 8, 2023Updated 3 years ago
• wckansai2016 / node-wp-api

  View on GitHub
  ☆10Jul 11, 2016Updated 9 years ago