Alternatives and similar repositories for phg_v2

Users that are interested in phg_v2 are comparing it to the libraries listed below

• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆54Updated last year
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• cihga39871 / Atria
  An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
  ☆37Updated 2 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 2 weeks ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆81Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆102Updated 10 months ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 6 years ago
• hcdenbakker / sepia
  taxonomic classifier based on the kraken2 algorithms and more
  ☆45Updated 2 months ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆86Updated 7 years ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆25Updated 3 years ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 5 months ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆99Updated 2 weeks ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated 2 weeks ago
• bioinfologics / w2rap-contigger
  An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
  ☆45Updated 2 years ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆59Updated last year
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆73Updated this week
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 2 months ago
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆68Updated 9 months ago
• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
  ☆34Updated last year
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• BioinformaticsToolsmith / MeShClust
  MeShClust: an intelligent tool for clustering DNA sequences
  ☆39Updated 3 years ago
• diriano / ploidyNGS
  Explore ploidy levels from NGS data alone
  ☆41Updated 2 years ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆107Updated this week
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 6 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆110Updated last year
• telatin / bamtocov
  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
  ☆64Updated last month
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆41Updated 8 years ago