Alternatives and similar repositories for phg_v2

Users that are interested in phg_v2 are comparing it to the libraries listed below

• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• cihga39871 / Atria
  An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
  ☆38Updated 4 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• hcdenbakker / sepia
  taxonomic classifier based on the kraken2 algorithms and more
  ☆46Updated last month
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆82Updated 5 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆107Updated 3 weeks ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆110Updated 2 weeks ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆71Updated 2 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆60Updated last year
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆57Updated 3 months ago
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆73Updated 10 months ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last month
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆53Updated 3 weeks ago
• pangenome / seqwish
  alignment to variation graph inducer
  ☆157Updated 3 weeks ago
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆71Updated 2 months ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆113Updated 3 weeks ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 9 months ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆121Updated 3 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 4 months ago
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆67Updated 4 years ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆126Updated last week
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆74Updated 3 weeks ago
• kfuku52 / csubst
  Molecular convergence detection
  ☆46Updated this week
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last month
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 5 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆119Updated last week
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆49Updated 11 months ago
• CshlSiepelLab / phast
  PHAST
  ☆80Updated last week