maize-genetics / phg_v2Links
Practical Haplotype Graph (PHG) version 2
☆30Updated 2 weeks ago
Alternatives and similar repositories for phg_v2
Users that are interested in phg_v2 are comparing it to the libraries listed below
Sorting:
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 6 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆89Updated 3 weeks ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- BWT construction and search☆122Updated this week
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- k-mer learning materials☆80Updated 10 months ago
- A list of software for pangenomics☆162Updated last week
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- alignment to variation graph inducer☆152Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆116Updated this week
- PacBio BAM toolkit☆48Updated 9 months ago
- ☆68Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- Genome Pair Rapid Dotter☆66Updated 4 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆45Updated 6 months ago
- A web application for interactive visualization and exploratory data analysis of variant call matrices☆21Updated 2 years ago
- ☆121Updated last month
- Assembled Genomes Compressor☆175Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆39Updated 7 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆135Updated 8 months ago
- PHAST☆77Updated this week