PacificBiosciences / pbAALinks
☆27Updated 9 months ago
Alternatives and similar repositories for pbAA
Users that are interested in pbAA are comparing it to the libraries listed below
Sorting:
- Specifications for PacBio® native file formats☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- ☆68Updated last month
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- ☆49Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆50Updated 3 weeks ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year