PacificBiosciences / pbAALinks
☆26Updated 7 months ago
Alternatives and similar repositories for pbAA
Users that are interested in pbAA are comparing it to the libraries listed below
Sorting:
- Specifications for PacBio® native file formats☆31Updated 10 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 6 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆36Updated this week
- Structural variant merging tool☆55Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 2 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- SNP-Assisted SV Calling and Phasing Using ONT☆25Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago