PacificBiosciences / pbAA
☆25Updated last week
Related projects ⓘ
Alternatives and complementary repositories for pbAA
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- perSVade: personalized Structural Variation detection☆36Updated 4 months ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- ☆23Updated this week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆29Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- ☆49Updated last year
- Find Unique genomic Regions☆29Updated this week
- catalog for long-read sequencing tools☆32Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- SV genotyping with long reads☆40Updated last year
- Structural variant caller☆54Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆76Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆70Updated last month
- a hidden Markov model to infer simple repeats from genome sequences☆34Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆35Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆70Updated last week
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆37Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated 2 weeks ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Hitting associations with k-mers☆46Updated 2 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year