PacificBiosciences / pbAA
☆25Updated 2 months ago
Alternatives and similar repositories for pbAA:
Users that are interested in pbAA are comparing it to the libraries listed below
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆36Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- perSVade: personalized Structural Variation detection☆38Updated last month
- WDL workflows for variant calling and assembly using ONT☆30Updated 3 weeks ago
- A program for assessing the T2T genome continuity☆62Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆26Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆36Updated 4 months ago
- A Nextflow pipeline for evaluating assembly quality☆27Updated last month
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆73Updated this week
- PacBio BAM toolkit☆39Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆39Updated 2 months ago
- Hitting associations with k-mers☆46Updated 2 years ago
- Structural variant merging tool☆49Updated 4 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Miscellaneous scripts for applications of PacBio systems☆25Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆15Updated 3 months ago