☆28Dec 22, 2025Updated 6 months ago
Alternatives and similar repositories for pbAA
Users that are interested in pbAA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiFi-based caller for highly similar paralogous genes☆69Jun 10, 2026Updated 3 weeks ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆22Jun 22, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated last month
- ☆11Mar 4, 2025Updated last year
- Convert genbank files to a swath of other formats☆31Jun 25, 2026Updated last week
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 4 months ago
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 3 weeks ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- ☆23May 21, 2025Updated last year
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- Fast sequencing data quality metrics☆34Apr 21, 2026Updated 2 months ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Dec 6, 2023Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Functional Enrichment Analysis and Network Construction☆10May 13, 2020Updated 6 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Oct 20, 2021Updated 4 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 8 months ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 3 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago