Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
☆17Jan 27, 2026Updated last month
Alternatives and similar repositories for apscale
Users that are interested in apscale are comparing it to the libraries listed below
Sorting:
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 7 months ago
- ☆17Nov 18, 2025Updated 3 months ago
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated last year
- ☆15Apr 6, 2016Updated 9 years ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated last month
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- ☆14Feb 20, 2026Updated last week
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- This RNAseq data analysis tutorial is created for educational purpose☆34Feb 18, 2026Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆44Updated this week
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- ☆11Sep 22, 2025Updated 5 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- ☆12Mar 15, 2025Updated 11 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- R package for creating simulated summary statistics and testing MR methods☆12Sep 2, 2020Updated 5 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 6 months ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- ☆10Jun 13, 2020Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 2 years ago