DominikBuchner / apscaleLinks
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
☆17Updated 2 months ago
Alternatives and similar repositories for apscale
Users that are interested in apscale are comparing it to the libraries listed below
Sorting:
- ☆14Updated last month
- ☆20Updated last week
- Software package for in silico simulation and testing of double digest RADseq experiments.☆19Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆23Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 3 weeks ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆20Updated last month
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Python3 Read Until API implementation☆11Updated 5 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated 2 years ago
- ☆32Updated 11 months ago
- starfish: a modular toolkit for giant mobile element annotation☆34Updated 11 months ago
- Tutorial on using E-utilities☆23Updated 8 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- metag-rev-sup☆22Updated 8 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 5 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Hierarchical clustering of cgMLST☆12Updated 2 years ago
- Qiime2 snakemake pipeline☆19Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆40Updated 3 months ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Updated 4 years ago
- Genome-wide de novo genotyping with 2bRAD☆23Updated 6 months ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Updated 5 years ago
- convert a blast output to a bed file☆12Updated 10 years ago