TillMacher / TaxonTableToolsLinks
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
☆23Updated last month
Alternatives and similar repositories for TaxonTableTools
Users that are interested in TaxonTableTools are comparing it to the libraries listed below
Sorting:
- Utilities for community ecology analysis☆19Updated 4 years ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 3 weeks ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆68Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Look Up Guild Information for Fungi in R☆22Updated 5 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 5 months ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- creating reference databases for amplicon sequencing☆40Updated last week
- Speedy versions of phyloseq functions☆48Updated last year
- Miscellaneous functions for metagenomic analysis.☆51Updated this week
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 6 months ago
- Phylogenetic penalized likelihood☆51Updated 2 months ago
- ☆21Updated 2 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 3 months ago
- dada2 formatted nifH database☆12Updated last year
- Sydney Phylogenetics Workshop☆66Updated last month
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- ☆12Updated last year
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Updated 9 months ago
- diversity estimation under ecological networks☆84Updated last month
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last week