TillMacher / TaxonTableToolsLinks
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
☆24Updated 6 months ago
Alternatives and similar repositories for TaxonTableTools
Users that are interested in TaxonTableTools are comparing it to the libraries listed below
Sorting:
- A web app for environmental DNA metabarcoding analysis☆11Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- eDNA metabarcoding pipeline☆43Updated 2 weeks ago
- Various functions for analysis of microbial community data☆47Updated 4 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 6 months ago
- JAMP - Just Another Metabarcoding Pipeline☆39Updated 4 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 5 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 9 months ago
- creating reference databases for amplicon sequencing☆46Updated 3 weeks ago
- functions for analyzing phyloseq data☆28Updated last year
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- Sydney Phylogenetics Workshop☆68Updated 7 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 5 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33Updated 2 years ago
- Phylogenetic penalized likelihood☆54Updated 7 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- ☆22Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆104Updated 2 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- A primer for computational tools to analyze genetics of populations in R☆89Updated 5 years ago
- Assign taxonomy with blast, can be used for qiime☆25Updated 10 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- R package and web app for spatial visualisation of admixture on a projected map☆46Updated 10 months ago
- Using ggtree to build phylogenetic trees☆50Updated last year