TillMacher / TaxonTableTools
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for TaxonTableTools
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 2 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated last year
- Look Up Guild Information for Fungi in R☆18Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆17Updated 4 months ago
- eDNA metabarcoding pipeline☆30Updated 2 months ago
- A web app for environmental DNA metabarcoding analysis☆9Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- Various functions for analysis of microbial community data☆41Updated 2 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆31Updated last year
- ☆20Updated last year
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- dada2 formatted nifH database☆11Updated 6 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 4 months ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- Phylogenetic penalized likelihood☆46Updated 3 months ago
- Analysis code for a manuscript on community similarity computation☆14Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆14Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Miscellaneous functions for metagenomic analysis.☆46Updated 5 months ago
- ☆11Updated 9 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated 11 months ago
- A set of R scripts for the analysis of microbial profiles☆40Updated 6 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 11 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆18Updated last week