TillMacher / TaxonTableTools
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
☆22Updated 2 years ago
Alternatives and similar repositories for TaxonTableTools
Users that are interested in TaxonTableTools are comparing it to the libraries listed below
Sorting:
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 10 months ago
- JAMP - Just Another Metabarcoding Pipeline☆35Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆15Updated 3 months ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- Utilities for community ecology analysis☆18Updated 4 years ago
- Look Up Guild Information for Fungi in R☆21Updated last month
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- ☆20Updated 2 years ago
- ☆12Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Phylogenetic penalized likelihood☆48Updated 9 months ago
- A python package to query different databases of boldsystems.org☆30Updated 6 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 10 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- creating reference databases for amplicon sequencing☆36Updated last month
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆27Updated 10 months ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated 2 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last week
- Sydney Phylogenetics Workshop☆62Updated 4 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Speedy versions of phyloseq functions☆48Updated last year