Alternatives and similar repositories for JAMP

Users that are interested in JAMP are comparing it to the libraries listed below

• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated last year
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆16Updated 3 weeks ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆45Updated 2 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆22Updated 5 months ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 4 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 5 months ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆23Updated last month
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated 2 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated this week
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 3 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆78Updated 2 years ago
• VascoElbrecht / PrimerMiner
  R mased batch sequence downloader, with primer development and in silico evaluation capabilities
  ☆36Updated 9 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆68Updated last year
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 6 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated last month
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆16Updated last year
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆19Updated 6 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 6 months ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆44Updated 4 months ago
• rogotoh / PMiFish
  ☆12Updated last year
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆40Updated last week
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 2 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆12Updated last year
• terrimporter / CO1Classifier
  This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…
  ☆32Updated 2 years ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆119Updated last year
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆32Updated 8 years ago