Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
☆21Nov 14, 2025Updated 7 months ago
Alternatives and similar repositories for mitohelper
Users that are interested in mitohelper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Feb 23, 2023Updated 3 years ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆19May 6, 2026Updated last month
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 11 months ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- eDNA metabarcoding pipeline☆47Mar 11, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Jun 24, 2026Updated last week
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated last month
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 5 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 10 months ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LoD calculator☆25Jul 11, 2019Updated 6 years ago
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 5 months ago
- Communities Assembly by Traits: Individuals and beyond☆13Apr 1, 2026Updated 3 months ago
- Information on the SCAR/rOpenSci collaboration to support open and reproducible Antarctic and Southern Ocean science☆12Sep 13, 2023Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Model and predicts species accounting for their known trophic interaction network☆18Jun 24, 2024Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 11 months ago
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 5 months ago
- ☆15Apr 1, 2024Updated 2 years ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- ☆16Jun 21, 2018Updated 8 years ago
- Importing and Analysing DArT type snp and silicodart data☆36Mar 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatio-temporal trends in habitat suitability from ecological niche models☆15Feb 4, 2026Updated 5 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Reproducible Reporting with R (R3) training materials for marine ecosystem indicators☆13Sep 7, 2021Updated 4 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 3 months ago
- package for interacting with fisheries databases at openfisheries.org☆27May 13, 2020Updated 6 years ago