aomlomics / mitohelper
Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
☆17Updated last week
Related projects: ⓘ
- ☆19Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆41Updated 6 months ago
- ☆10Updated 6 months ago
- Automated de novo assembly of whole chloroplast genomes.☆43Updated 8 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 4 months ago
- eDNA metabarcoding pipeline☆30Updated last week
- Tutorial about R package PopGenome☆39Updated 5 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- ☆37Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆24Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated 10 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Metagenomic Analysis in Real Time☆17Updated 3 weeks ago
- Interim data for the Darwin Tree of Life Project☆32Updated 4 years ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆29Updated 4 months ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆10Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆62Updated 8 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆29Updated 3 years ago
- Repository for speciation genomics website☆24Updated 2 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Updated last year
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆40Updated last week
- spruceup☆19Updated 3 weeks ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆42Updated this week
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆13Updated 4 months ago
- ☆16Updated 3 years ago