aomlomics / mitohelperLinks
Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
☆19Updated last week
Alternatives and similar repositories for mitohelper
Users that are interested in mitohelper are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- creating reference databases for amplicon sequencing☆40Updated last week
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆30Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Updated 2 months ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- Tools for visualising microbial community amplicon data☆69Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 3 weeks ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 4 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- GPU-accelerated DNA barcode classification☆11Updated 9 months ago
- microhaplotype visualizer and analyzer☆19Updated 4 years ago
- eDNA metabarcoding pipeline☆37Updated 3 weeks ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month