aomlomics / mitohelper
Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
☆18Updated this week
Alternatives and similar repositories for mitohelper:
Users that are interested in mitohelper are comparing it to the libraries listed below
- ☆20Updated last year
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆18Updated 8 months ago
- eDNA metabarcoding pipeline☆31Updated last month
- ☆11Updated 10 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 2 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆46Updated 10 months ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆15Updated 4 months ago
- Using ggtree to build phylogenetic trees☆45Updated 2 months ago
- ☆21Updated 5 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆35Updated 8 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆56Updated 2 months ago
- Micro 612 genomics workshop☆36Updated 3 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆44Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated 8 months ago
- Synteny Imager☆60Updated 4 months ago
- starfish: a modular toolkit for giant mobile element annotation☆28Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Tutorial about R package PopGenome☆41Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year