melkimble / medna-metadataLinks
An open-source data management system for tracking environmental DNA samples and metadata
☆15Updated last year
Alternatives and similar repositories for medna-metadata
Users that are interested in medna-metadata are comparing it to the libraries listed below
Sorting:
- eDNA metabarcoding pipeline☆42Updated 3 weeks ago
- creating reference databases for amplicon sequencing☆44Updated last month
- the hierfstat package☆25Updated last year
- Tools for visualising microbial community amplicon data☆70Updated 2 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 5 months ago
- A repository for my work on rCRUX☆12Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 5 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Updated 4 months ago
- functions for analyzing phyloseq data☆28Updated 11 months ago
- microbiome data simulation package☆22Updated 3 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- R shiny app for interactive microbiome analysis☆56Updated 7 months ago
- Implementation of CoNet in R☆16Updated 6 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- ☆22Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Updated this week
- A set of R scripts for the analysis of microbial profiles☆41Updated this week
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- functions to analyse sanger sequencing reads in R☆104Updated last month
- Genome wide orthology inference and dNdS estimation☆96Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- ☆17Updated last month
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago