Alternatives and similar repositories for BioinfinvRepro

Users that are interested in BioinfinvRepro are comparing it to the libraries listed below

• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last week
• rrwick / Perfect-bacterial-genome-tutorial
  ☆155Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆166Updated 3 weeks ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆81Updated 2 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆147Updated last month
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆211Updated 5 months ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆47Updated last week
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆119Updated 4 years ago
• jtlovell / GENESPACE
  ☆232Updated last year
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated last week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆125Updated 2 weeks ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆113Updated 9 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆120Updated 2 years ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆233Updated this week
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆135Updated last year
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆103Updated last year
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆31Updated last week
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆131Updated last month
• mjsull / Easyfig
  Development version of Easyfig
  ☆104Updated 2 years ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆104Updated 2 months ago
• AliciaMstt / BioinfinvRepro
  repositorio de apuntes y código del curso "Introducción a la bioinformática e investigación reproducible para análisis genéticos"
  ☆34Updated 6 years ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆67Updated this week
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆92Updated 7 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated last week
• ddarriba / modeltest
  Best-fit model selection
  ☆87Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• jodyphelan / genomics_course
  ☆12Updated 10 months ago
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆106Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago