Alternatives and similar repositories for BioinfinvRepro

Users that are interested in BioinfinvRepro are comparing it to the libraries listed below

• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆31Updated last week
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated last week
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆166Updated 3 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last week
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆177Updated last week
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆103Updated last year
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆211Updated 5 months ago
• jtlovell / GENESPACE
  ☆232Updated last year
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆233Updated this week
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆216Updated 3 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆81Updated 2 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆147Updated last month
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆113Updated 9 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆155Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 6 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆104Updated 2 years ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆47Updated last week
• SchlossLab / MiSeq_WetLab_SOP
  ☆61Updated 6 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆217Updated 2 years ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆169Updated 5 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆143Updated 2 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆207Updated last year
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 8 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆125Updated 2 weeks ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆119Updated 4 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆338Updated 5 months ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆252Updated last month