Example vignette for dotdotdot software
☆19Apr 9, 2021Updated 5 years ago
Alternatives and similar repositories for dotdotdot
Users that are interested in dotdotdot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An automated MATLAB tool for segmentation of surface stained cells.☆28Jul 29, 2019Updated 7 years ago
- ☆24Sep 13, 2025Updated last year
- DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images☆15Dec 1, 2021Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆15Oct 27, 2021Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 1, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆15May 2, 2019Updated 7 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- trackR - A simple video tracking software for R☆35Mar 10, 2024Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 6 years ago
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆26Sep 5, 2026Updated last month
- Single cell RNA-seq analysis for transcriptomic type characterization☆43Apr 7, 2026Updated 6 months ago
- load an image from lif file as a numpy array☆10Jun 2, 2022Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PSF simulation and 3D Deconvolution for Light-Field Microscopy in Julia☆12Dec 10, 2019Updated 6 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆57Aug 30, 2024Updated 2 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆30Oct 28, 2025Updated 11 months ago
- Segmentation-free Analysis of In Situ Capture data☆15Updated this week
- ggplot to loon☆28Jun 12, 2025Updated last year
- Shiny App for comparison of samples and plotting effect size☆29Apr 9, 2024Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- ☆21Sep 20, 2021Updated 5 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- DLBI: Deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy☆14May 20, 2018Updated 8 years ago
- ☆11Oct 21, 2025Updated 11 months ago
- ☆15Jun 13, 2025Updated last year
- ☆13Nov 3, 2023Updated 2 years ago
- ☆56Dec 13, 2020Updated 5 years ago
- Analysis of ultrasonic vocalizations from mice using computer vision and machine learning☆33Jun 30, 2023Updated 3 years ago
- Fiji plugins for starting BigDataViewer and exporting data.☆24Sep 19, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for distance- and density-based outlier detection☆12May 28, 2019Updated 7 years ago
- Linear trajectory inference for single-cell RNA-seq☆64Nov 26, 2025Updated 10 months ago
- Cross-correlation coefficients in Python☆13Sep 22, 2017Updated 9 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- ☆11Jun 3, 2018Updated 8 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago