Alternatives and similar repositories for dotdotdot

Users that are interested in dotdotdot are comparing it to the libraries listed below

• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated last month
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆11Updated 8 years ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 4 years ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 4 years ago
• oganm / allenBrain
  Acquiring images from allen brain atlas, mouse ISH experiments in R.
  ☆17Updated last year
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆86Updated this week
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆17Updated 4 years ago
• mjin1812 / SMART
  Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
  ☆14Updated 4 years ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆35Updated 2 weeks ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆34Updated last year
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated 2 months ago
• AhsenChaudhry / Mitochondria-Analyzer
  Mitochondria Analyzer
  ☆22Updated 2 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆47Updated last year
• SpatialTranscriptomicsResearch / st_spot_detector
  A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
  ☆25Updated 2 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆32Updated 5 months ago
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆23Updated 7 years ago
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆14Updated last year
• AllenInstitute / scrattch.hicat
  Hierarchical, iterative clustering for analysis of transcriptomics data in R
  ☆117Updated 2 months ago
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆33Updated 5 months ago
• HiDiHlabs / sainsc
  Segmentation-free Analysis of In Situ Capture data
  ☆11Updated 3 weeks ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last month
• maggiecrow / MetaNeighbor
  ☆48Updated 7 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆16Updated last year
• pengminshi / MRtree
  MRtree R implementation
  ☆12Updated 2 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• niaid / imaris_extensions
  Algorithmic and Utility Extensions for the Imaris Program
  ☆19Updated last month
• nf-core / spatialxe
  ☆23Updated last week