LieberInstitute / dotdotdotLinks
Example vignette for dotdotdot software
☆18Updated 4 years ago
Alternatives and similar repositories for dotdotdot
Users that are interested in dotdotdot are comparing it to the libraries listed below
Sorting:
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆49Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last month
- ☆11Updated 4 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last week
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆76Updated last week
- Repository for storing prototype functionality implementations for the BKP☆27Updated 2 weeks ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- Analysis of TrackMate XML outputs in R☆13Updated 11 months ago
- Toolbox for the analysis of smFISH images.☆62Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- Building Gene Sets and Mapping mFISH Data☆16Updated last year
- quantixed FIJI update site☆16Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Spatial analysis of FISH data☆30Updated 2 weeks ago
- Mitochondria Analyzer☆20Updated 2 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 3 years ago
- Algorithmic and Utility Extensions for the Imaris Program☆17Updated 8 months ago
- ABBA, controlled from python☆13Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- ☆28Updated 7 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year