LieberInstitute / dotdotdotLinks
Example vignette for dotdotdot software
☆18Updated 4 years ago
Alternatives and similar repositories for dotdotdot
Users that are interested in dotdotdot are comparing it to the libraries listed below
Sorting:
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆91Updated 3 weeks ago
- Repository for storing prototype functionality implementations for the BKP☆38Updated 2 weeks ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆25Updated last month
- Spatial analysis of FISH data☆34Updated 7 months ago
- Mitochondria Analyzer☆23Updated 3 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Brain Cell Type Specific Gene Expression Analysis☆17Updated last year
- COmmon COordinate FRAMEwork in R☆37Updated 5 years ago
- Analysis of smFISH data☆11Updated 7 years ago
- Analysis of TrackMate XML outputs in R☆16Updated 2 weeks ago
- MRtree R implementation☆12Updated 2 years ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 7 years ago
- ☆48Updated 7 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- quantixed FIJI update site☆17Updated last month
- Histology Topography Cytometry Analysis Toolbox☆69Updated last month
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆119Updated 4 months ago
- ☆41Updated 2 years ago