LieberInstitute / dotdotdotLinks
Example vignette for dotdotdot software
☆18Updated 4 years ago
Alternatives and similar repositories for dotdotdot
Users that are interested in dotdotdot are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last month
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- Repository for storing prototype functionality implementations for the BKP☆35Updated 2 weeks ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆86Updated this week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆117Updated 2 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆23Updated 7 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Updated 2 months ago
- ☆41Updated 2 years ago
- Mitochondria Analyzer☆22Updated 2 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Spatial analysis of FISH data☆32Updated 5 months ago
- ☆51Updated last week
- Analysis of smFISH data☆11Updated 7 years ago
- ☆48Updated 7 years ago
- MRtree R implementation☆12Updated 2 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆25Updated 2 years ago
- ☆23Updated last week
- Algorithmic and Utility Extensions for the Imaris Program☆19Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month