Alternatives and similar repositories for dotdotdot

Users that are interested in dotdotdot are comparing it to the libraries listed below

• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆16Updated 4 years ago
• mjin1812 / SMART
  Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
  ☆14Updated 4 years ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 4 years ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated 2 months ago
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆11Updated 8 years ago
• oganm / allenBrain
  Acquiring images from allen brain atlas, mouse ISH experiments in R.
  ☆17Updated last year
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆90Updated last week
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆37Updated 5 years ago
• AhsenChaudhry / Mitochondria-Analyzer
  Mitochondria Analyzer
  ☆22Updated 2 years ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 4 years ago
• quantixed / TrackMateR
  Analysis of TrackMate XML outputs in R
  ☆16Updated 2 months ago
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆14Updated last year
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆36Updated last month
• AllenInstitute / scrattch.hicat
  Hierarchical, iterative clustering for analysis of transcriptomics data in R
  ☆118Updated 3 months ago
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated 3 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆34Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆91Updated 4 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆16Updated last year
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 9 months ago
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆16Updated last week
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆24Updated 7 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆33Updated 6 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆68Updated 2 years ago
• kf-cuanschutz / CU-Anschutz-HPC-documentation
  All documentation associated with bioinformatics tutorial on the Alpine cluster
  ☆28Updated last month
• DrHanLim / EzColocalization
  ☆12Updated 4 years ago
• niaid / imaris_extensions
  Algorithmic and Utility Extensions for the Imaris Program
  ☆19Updated 2 months ago