Example vignette for dotdotdot software
☆18Apr 9, 2021Updated 4 years ago
Alternatives and similar repositories for dotdotdot
Users that are interested in dotdotdot are comparing it to the libraries listed below
Sorting:
- DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images☆15Dec 1, 2021Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Oct 27, 2021Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- R package for testing and visualizing gene list overlaps☆19Aug 22, 2016Updated 9 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- An automated MATLAB tool for segmentation of surface stained cells.☆28Jul 29, 2019Updated 6 years ago
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆24Updated this week
- ☆24Sep 13, 2025Updated 5 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 3 years ago
- ☆56Dec 13, 2020Updated 5 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Aug 30, 2024Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- ARCHIVED An R Interface to 'figshare'☆38May 10, 2022Updated 3 years ago
- Shiny App for comparison of samples and plotting effect size☆29Apr 9, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 6 months ago
- Linear trajectory inference for single-cell RNA-seq☆61Nov 26, 2025Updated 3 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆29Oct 28, 2025Updated 4 months ago
- Paired Genomic Loci Tool Suite☆34Nov 23, 2022Updated 3 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- NEW v1.1: https://github.com/dstolz/epsych_v1.1 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and sof…☆15Apr 14, 2022Updated 3 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆38Oct 25, 2018Updated 7 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- Fast radial symmetry transform implemented in pure python.☆13Apr 27, 2019Updated 6 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 10 years ago
- trackR - A simple video tracking software for R☆34Mar 10, 2024Updated last year
- PSF simulation and 3D Deconvolution for Light-Field Microscopy in Julia☆11Dec 10, 2019Updated 6 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Biwhitened PCA☆14Feb 3, 2026Updated 3 weeks ago
- Segmentation-free Analysis of In Situ Capture data☆13Jan 5, 2026Updated last month
- Website and slides for intro to bioinformatics class at Fred Hutch☆13Jun 4, 2018Updated 7 years ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated 9 months ago