AllenCellModeling / pytorch_fnet
Three dimensional cross-modal image inference
☆152Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for pytorch_fnet
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- U-net based segmentation of nuclei in microscopy images☆51Updated 6 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆27Updated last year
- Open source Python library for building bioimage analysis pipelines☆125Updated last week
- Morphological profiling using deep learning☆107Updated last month
- Code repository for our paper titled "Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neura…☆44Updated 4 years ago
- CellProfiler tutorial pipelines and images☆84Updated 3 weeks ago
- ☆30Updated 2 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆74Updated 2 months ago
- Read and write life sciences file formats☆132Updated 2 months ago
- Joint training of denoising and segmentation.☆68Updated last year
- Code for In silico labeling: Predicting fluorescent labels in unlabeled images☆260Updated 4 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆49Updated last year
- ☆116Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆19Updated 2 years ago
- A python algorithm for tracking cells in 3D time lapse images.☆52Updated 2 months ago
- Image restoration for fluorescence microscopy☆285Updated last month
- ☆25Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆58Updated 4 years ago
- ☆55Updated last week
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆42Updated last year
- An introduction to deepcell and deep learning☆141Updated last month
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Notebooks for VoidSeg☆16Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆27Updated last year
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆19Updated 4 years ago