Things we use regularly
☆29Aug 5, 2025Updated 6 months ago
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below
Sorting:
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Mar 2, 2019Updated 6 years ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆45Updated this week
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆31Sep 14, 2024Updated last year
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 5 years ago
- A python toolkit for fluorescence microscopy.☆23Dec 17, 2025Updated 2 months ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Feb 2, 2026Updated 3 weeks ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Collection of literature, math, etc. for Structured Illumination Microscopy☆10Apr 23, 2019Updated 6 years ago
- ☆17Jan 13, 2025Updated last year
- A toolbox to illustrate the use of CUDA together with Matlab.☆10Jan 5, 2017Updated 9 years ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 4 years ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 5 years ago
- Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)☆13Dec 12, 2022Updated 3 years ago
- ☆14Sep 29, 2020Updated 5 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Feb 9, 2026Updated 3 weeks ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.☆41Feb 18, 2026Updated last week
- Running compute-intense parts of BigStitcher distributed☆30Feb 10, 2026Updated 2 weeks ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- 8 channel analog output shield for Arduino Uno☆13Dec 21, 2020Updated 5 years ago
- Image reconstruction for structured-illumination microscopy implemented in CUDA☆14Feb 17, 2016Updated 10 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two…☆12Apr 27, 2020Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated 3 weeks ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Oct 26, 2018Updated 7 years ago
- OpenSIM matlab code☆57Apr 7, 2016Updated 9 years ago