Alternatives and similar repositories for tools

Users that are interested in tools are comparing it to the libraries listed below

• MSiemons / REALM
  Adaptive Optics plugin for MicroManager
  ☆12Updated 3 years ago
• royerlab / daxi
  High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
  ☆27Updated 9 months ago
• tlambert03 / PSFmodels
  Python bindings for scalar and vectorial models of the 3D microscope point spread function.
  ☆49Updated last year
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆41Updated 8 months ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆42Updated 2 weeks ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 2 months ago
• maweigert / biobeam
  GPU accelerated beam propagation tools for biological light tissue simulations
  ☆36Updated 6 years ago
• aherbert / gdsc-smlm
  GDSC Single Molecule Light Microscopy ImageJ Plugins
  ☆16Updated last week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆65Updated 3 weeks ago
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆25Updated 4 years ago
• ShuJiaLab / ACsN
  Automatic Correction for sCMOS-related Noise
  ☆17Updated 3 years ago
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆19Updated last week
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆79Updated 3 years ago
• eguomin / regDeconProject
  code of the registration and deconvolution project
  ☆34Updated 4 years ago
• MontpellierRessourcesImagerie / MetroloJ_QC
  ☆13Updated 5 months ago
• fmi-faim / napari-psf-analysis
  A napari plugin to analysis point spread functions.
  ☆13Updated 2 months ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆40Updated 2 months ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆21Updated 5 years ago
• adanog / MSSR
  MSSR Plugin
  ☆13Updated 7 months ago
• PRNicovich / 3D-Printed-Optics-Lab-Parts
  Various parts made for fluorescence microscopy + optics work
  ☆16Updated 5 years ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• acquire-project / acquire-python
  Acquire: a multi-camera video streaming software focusing on microscopy
  ☆21Updated 7 months ago
• imodpasteur / ZOLA-3D
  Zernike Optimized Localization Algorithm for 3D single molecule localizations
  ☆19Updated 2 years ago
• henrypinkard / Pygellan
  [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan
  ☆14Updated 5 years ago
• ZhuangLab / storm-control
  Microscope control software
  ☆68Updated 4 months ago
• eguomin / diSPIMFusion
  A package for processing diSPIM images with GPU implementation
  ☆14Updated 3 years ago
• royerlab / dexp
  Dataset EXploration & Processing
  ☆32Updated 2 years ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 10 months ago
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated 3 weeks ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆29Updated 3 weeks ago