AndrewGYork / toolsLinks
Things we use regularly
☆29Updated this week
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below
Sorting:
- GPU accelerated beam propagation tools for biological light tissue simulations☆36Updated 6 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆28Updated 10 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆41Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated last week
- Lattice light-sheet post-processing utility.☆29Updated last week
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 5 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated 3 weeks ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆49Updated last year
- widget for PSF simulation with aberrations☆24Updated last year
- Adaptive Optics plugin for MicroManager☆12Updated 3 years ago
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆80Updated 3 years ago
- Various parts made for fluorescence microscopy + optics work☆16Updated 6 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆43Updated last month
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 11 months ago
- python tools for BigDataViewer☆22Updated 7 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- python functions for simulating optical transfer functions☆75Updated last year
- CUDA-accelerated reconstruction for 3D-structured-illumination☆9Updated last year
- Dataset EXploration & Processing☆32Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- ☆25Updated 2 weeks ago
- Pure python/C++ micro-manager ecosystem☆41Updated this week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 9 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆70Updated last week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week