AndrewGYork / toolsLinks
Things we use regularly
☆29Updated 10 months ago
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below
Sorting:
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated last week
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆41Updated 8 months ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆36Updated 6 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago
- Lattice light-sheet post-processing utility.☆29Updated last week
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆79Updated 3 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 5 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 10 months ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated 2 weeks ago
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆49Updated last year
- Adaptive Optics plugin for MicroManager☆12Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆42Updated 2 weeks ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- The python-microscopy environment - an open-source package for light microscopy☆89Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆69Updated last week
- Dataset EXploration & Processing☆32Updated 2 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- A hub to start the next generation of Microscope Control Software☆55Updated 4 years ago
- Pure python/C++ micro-manager ecosystem☆40Updated this week
- python functions for simulating optical transfer functions☆75Updated last year
- A napari plugin to analysis point spread functions.☆13Updated 3 months ago
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆98Updated 6 years ago
- my first baby steps with Napari☆10Updated 5 years ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆77Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week