Alternatives and similar repositories for aics-ml-segmentation

Users that are interested in aics-ml-segmentation are comparing it to the libraries listed below

• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆25Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆100Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆84Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆35Updated 5 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Updated last year
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆55Updated last month
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 9 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated 4 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆80Updated 6 months ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆88Updated 3 weeks ago
• KerenLab / CellSighter
  ☆37Updated 2 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆188Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated last week
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated 2 weeks ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 2 months ago
• cellimnet / scellseg-publish
  A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
  ☆10Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆59Updated 6 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 months ago
• peng-lab / BaSiCPy
  ☆91Updated 3 months ago
• instanseg / instanseg
  ☆209Updated this week
• michaellee1 / CellSeg
  ☆24Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 3 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆156Updated last year
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆192Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆34Updated 7 months ago