☆33Jul 31, 2025Updated 11 months ago
Alternatives and similar repositories for aics-ml-segmentation
Users that are interested in aics-ml-segmentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Jul 22, 2024Updated last year
- Automated Cell Toolkit☆24Oct 15, 2025Updated 8 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆14Jan 27, 2024Updated 2 years ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Jun 15, 2023Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 3 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- A fully scalable robust image feature extraction library.☆28Updated this week
- ImgLib2 integration for ClearVolume☆12Jun 11, 2026Updated 3 weeks ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 7 months ago
- Codes for the ICLR 2022 paper: Trigger Hunting with a Topological Prior for Trojan Detection☆11Sep 19, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mitochondria Analyzer☆29Dec 13, 2022Updated 3 years ago
- Three dimensional cross-modal image inference☆162Oct 15, 2025Updated 8 months ago
- Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…☆36May 29, 2026Updated last month
- A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy☆17Apr 23, 2025Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Jun 25, 2026Updated last week
- The is a repository containing MATLAB and Python code used in teaching graduate students in neuroscience.☆14Jan 20, 2022Updated 4 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆30Mar 16, 2026Updated 3 months ago
- Analysis tools specific to the aiephys multipatch project.☆12Oct 23, 2025Updated 8 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Apr 10, 2023Updated 3 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆34Jul 29, 2023Updated 2 years ago
- Calculation of euclidean distance between vectors, with SIMD☆13Jan 17, 2024Updated 2 years ago
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆198Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- Cell tracking and segmentation software☆178Jun 3, 2026Updated 3 weeks ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC …☆11Dec 17, 2020Updated 5 years ago
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated 2 years ago
- ☆225Feb 4, 2026Updated 4 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 8 months ago