AllenCell / aics-ml-segmentation
☆31Updated 2 years ago
Alternatives and similar repositories for aics-ml-segmentation
Users that are interested in aics-ml-segmentation are comparing it to the libraries listed below
Sorting:
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Updated 9 months ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- Cloud-based data annotation tools for biological images☆79Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- ☆32Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated last week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Raw format to OME-TIFF converter☆52Updated 2 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆17Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆85Updated this week
- ☆20Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 8 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Python package for deep learning based image to image transformation☆53Updated 11 months ago
- Interactive visualization of spatial omics data☆55Updated this week
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- ☆71Updated last month
- Accurate and efficient spot detection for microscopy data☆75Updated 3 weeks ago