AndrewGYork / remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/
☆12Updated 2 months ago
Related projects: ⓘ
- Various tools & templates for manuscript preparation (Illustrator and InDesign)☆15Updated 5 years ago
- Fast reconstruction of spatial networks from bioimages.☆24Updated last month
- ☆20Updated 6 months ago
- AutoPilot library☆14Updated 7 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆13Updated 3 weeks ago
- PSFj - Know your microscope fluorescence☆19Updated 4 years ago
- ☆10Updated 3 years ago
- Visualization of fluorescent protein properties with d3.js. Obsolete.☆12Updated 6 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆11Updated 3 years ago
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆18Updated last month
- Software for Quantifying Mitochondrial Content in Live Cells☆24Updated 2 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 2 weeks ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 3 years ago
- A toolkit to quantify cell dynamics in living tissues☆11Updated 5 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆17Updated 8 months ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- HDF5 plugin for ImageJ and Fiji.☆9Updated 2 years ago
- Julia package for the Napari multi-dimensional image viewer☆10Updated 2 years ago
- Visualization of fluorescent protein properties with d3.js☆13Updated 7 years ago
- ☆19Updated 10 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 3 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆17Updated last month
- ☆19Updated 3 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆27Updated last week
- ImageJ convenience layer for N5☆14Updated 2 weeks ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Updated 6 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆14Updated last week