Code for In silico labeling: Predicting fluorescent labels in unlabeled images
☆266Oct 13, 2020Updated 6 years ago
Alternatives and similar repositories for in-silico-labeling
Users that are interested in in-silico-labeling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- LivecellX is a comprehensive single-cell oriented deep learning live-cell analysis framework written in Python, designed specifically for…☆16Sep 29, 2026Updated last month
- Unsupervised content-preserving transformation for optical microscopy☆30Oct 9, 2025Updated last year
- ☆40Mar 11, 2020Updated 6 years ago
- Label Free Prediction of Cell Painting from Brightfield Images☆36Jul 7, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Biologically RElevant VIrtual Staining☆12Dec 10, 2021Updated 4 years ago
- Integrated Cell project implemented in pytorch☆44Oct 15, 2025Updated last year
- H&E histopathological staining normalization☆112Jan 24, 2020Updated 6 years ago
- ☆92Dec 17, 2023Updated 2 years ago
- An open-source application for biological image analysis☆1,141Updated this week
- Microscopy Image Cytometry Toolkit☆118Jul 15, 2022Updated 4 years ago
- Deep convolutional neural networks for biological motion analysis☆15Jan 26, 2019Updated 7 years ago
- Smooth 2D manifold extraction from 3D image stack☆22Mar 18, 2018Updated 8 years ago
- CVPR 2019: Fluorescence Microscopy Denoising (FMD) dataset☆158Oct 30, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Image restoration for fluorescence microscopy☆337Dec 8, 2025Updated 10 months ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆132Jun 25, 2019Updated 7 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆207Sep 15, 2020Updated 6 years ago
- Tools for munging genomic data☆21Jul 9, 2019Updated 7 years ago
- Tools for tissue image stain normalisation and augmentation in Python 3☆347May 8, 2021Updated 5 years ago
- Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK☆11Jul 8, 2020Updated 6 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆34Jul 29, 2023Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Official PyTorch implementation of the "SN2N"☆16Jan 17, 2026Updated 9 months ago
- Explainable AI model of cell behavior☆20Apr 4, 2023Updated 3 years ago
- Morphological profiling using deep learning☆131Oct 13, 2026Updated 2 weeks ago
- Classification of Lung cancer slide images using deep-learning☆537Sep 24, 2024Updated 2 years ago
- Cell tracking using TensorFlow and BayesianTracker☆23Jan 17, 2022Updated 4 years ago
- Code repository for our paper titled "Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neura…☆54Mar 18, 2020Updated 6 years ago
- ☆62Jul 20, 2018Updated 8 years ago
- U-net based segmentation of nuclei in microscopy images☆57Sep 13, 2018Updated 8 years ago
- ☆349Nov 21, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deep Learning Library for Single Cell Analysis☆481Jun 4, 2026Updated 4 months ago
- Python utilities for working with photon timestamp data from fluorescence spectroscopy experiments☆14Sep 27, 2021Updated 5 years ago
- 自己项目整理的目录文件,方便查找,持续更新中☆20Jul 27, 2019Updated 7 years ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆21Dec 18, 2025Updated 10 months ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- ☆51Jun 26, 2018Updated 8 years ago