Alternatives and similar repositories for DeepCell:

Users that are interested in DeepCell are comparing it to the libraries listed below

• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• jr0th / segmentation
  Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
  ☆43Updated 6 years ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆39Updated 3 years ago
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 5 years ago
• cxhernandez / cellcount
  A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
  ☆58Updated 5 years ago
• yaoxuexa / CNNCS
  ☆3Updated 7 years ago
• Fafa87 / cellstar
  Algorithm for round cells identification in the brightfield microscopy images.
  ☆21Updated last year
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆43Updated 9 months ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago
• AllenCellModeling / torch_integrated_cell
  ☆46Updated 6 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆86Updated 2 years ago
• SaadUllahAkram / CellProposalNetwork
  Demos for Cell Proposal Networks presented in ICIP 16 and DLMIA 16 (MICCAI-W)
  ☆17Updated 7 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆76Updated 4 years ago
• bchidest / CFNet
  ☆26Updated 6 years ago
• google / in-silico-labeling
  Code for In silico labeling: Predicting fluorescent labels in unlabeled images
  ☆260Updated 4 years ago
• google / microscopeimagequality
  ☆90Updated last year
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• spreka / annotatorj
  AnnotatorJ: ImageJ plugin for object annotation in 2D
  ☆25Updated 4 years ago
• arbellea / DeepCellSeg
  ☆21Updated 6 years ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago
• NoahApthorpe / ConvnetCellDetection
  Automatic cell detection in microscopy data using convolutional networks
  ☆33Updated 2 years ago
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 2 years ago
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• quqixun / CellDetection
  A course project that detect cells in image by a simple full convolution neural network. The project is driven by TensorFlow.
  ☆20Updated 7 years ago
• BigNeuron / BigNeuron-Wiki
  Documentations of BigNeuron Project progress
  ☆24Updated 9 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆29Updated last year