Alternatives and similar repositories for DeepCell

Users that are interested in DeepCell are comparing it to the libraries listed below

• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 8 years ago
• google / in-silico-labeling
  Code for In silico labeling: Predicting fluorescent labels in unlabeled images
  ☆261Updated 4 years ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 3 years ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆55Updated 4 years ago
• jr0th / segmentation
  Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
  ☆43Updated 7 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 years ago
• cxhernandez / cellcount
  A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
  ☆60Updated 6 years ago
• AllenCellModeling / torch_integrated_cell
  ☆46Updated 7 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆22Updated 5 years ago
• arbellea / DeepCellSeg
  ☆21Updated 7 years ago
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆158Updated 4 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆44Updated last year
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago
• google / microscopeimagequality
  ☆91Updated last year
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆88Updated 2 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 5 years ago
• DigitalSlideArchive / CNNCellDetection
  This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…
  ☆26Updated 2 years ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆158Updated last month
• fordanic / openslide-matlab
  A MATLAB library providing bindings to the C library OpenSlide (https://github.com/openslide/openslide) used for reading whole-slide imag…
  ☆18Updated 6 years ago
• choosehappy / public
  ☆77Updated 8 months ago
• quqixun / CellDetection
  A course project that detect cells in image by a simple full convolution neural network. The project is driven by TensorFlow.
  ☆20Updated 8 years ago
• Nellaker-group / TowardsDeepPhenotyping
  ☆44Updated 6 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• SaadUllahAkram / CellProposalNetwork
  Demos for Cell Proposal Networks presented in ICIP 16 and DLMIA 16 (MICCAI-W)
  ☆17Updated 8 years ago
• Fafa87 / cellstar
  Algorithm for round cells identification in the brightfield microscopy images.
  ☆21Updated 2 years ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago