AICS Segmentation (One-Way) Mirror
☆45Dec 16, 2020Updated 5 years ago
Alternatives and similar repositories for aics-segmentation
Users that are interested in aics-segmentation are comparing it to the libraries listed below
Sorting:
- AICS ML Segmentation (One-Way) Mirror☆27May 2, 2021Updated 4 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- ☆23Mar 26, 2021Updated 4 years ago
- ☆14May 17, 2024Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Jan 15, 2025Updated last year
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- U-net based segmentation of nuclei in microscopy images☆54Sep 13, 2018Updated 7 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- ☆13Aug 16, 2024Updated last year
- ☆24Aug 27, 2020Updated 5 years ago
- ☆12Jan 10, 2021Updated 5 years ago
- a software library containing FFT functions written in OpenCL☆12Dec 12, 2024Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- Interactive ultrasound applications using streamed images from an Interson linear array probe.☆13Feb 10, 2020Updated 6 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 2 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- Computational Geometry Sandbox. Graham's Scan, Jarvis's March, KD Tree, Nearest Neighbor☆12Nov 23, 2015Updated 10 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- Learn morphological states of dynamic cells☆12Apr 16, 2023Updated 2 years ago
- Workshop on Medical Image Analysis using pydicom, SimpleITK, ITK, itkwidgets, numpy, seaborn, and matplotlib☆13Nov 11, 2020Updated 5 years ago
- Open-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels☆16Feb 16, 2026Updated last week
- ☆13Mar 10, 2020Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆62Feb 20, 2026Updated last week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- A napari plugin for zarr backed OME-NGFF images☆44Updated this week
- Hardware documentation for the mesoSPIM microscope project☆34Aug 21, 2025Updated 6 months ago
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆15Mar 28, 2019Updated 6 years ago
- ☆12Dec 23, 2020Updated 5 years ago
- Zarr filesystem backend for N5☆19Feb 12, 2026Updated 2 weeks ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 7 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week