AllenInstitute / aics-segmentationLinks
AICS Segmentation (One-Way) Mirror
☆45Updated 4 years ago
Alternatives and similar repositories for aics-segmentation
Users that are interested in aics-segmentation are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- Track and lineage visualization with btrack and Napari☆46Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 8 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 5 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- Easily read and write ome-tiff images in python☆27Updated last year
- ☆39Updated last week
- Cell tracker designed for tracking intestinal organoids☆26Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- ☆25Updated 5 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- Community-contributed and experimental CellProfiler modules.☆68Updated this week
- Read and write life sciences file formats☆141Updated 3 months ago
- GPU-accelerated image processing for everyone☆54Updated last year