AllenInstitute / aics-segmentationLinks
AICS Segmentation (One-Way) Mirror
☆45Updated 4 years ago
Alternatives and similar repositories for aics-segmentation
Users that are interested in aics-segmentation are comparing it to the libraries listed below
Sorting:
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Lectures for a napari training course☆51Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated 10 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 7 months ago
- ☆32Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- ☆24Updated 5 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Easily read and write ome-tiff images in python☆28Updated last year
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ☆31Updated 10 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- ☆16Updated last year
- Read and write life sciences file formats☆142Updated 5 months ago