ruchikaverma-iitg / Nuclei-Segmentation
This repository contains an implementation of a deep learning Mask R-CNN algorithm for nuclei segmentation from whole slide images of tissue sections using data from our MoNuSeg Challenge.
☆17Updated 4 years ago
Related projects: ⓘ
- Re-stained whole slide image alignment☆30Updated 11 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆45Updated 2 years ago
- The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.☆28Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆50Updated 3 months ago
- Code related to the PANDA challenge on artificial intelligence for Gleason grading☆12Updated 2 years ago
- Preprocessing module for large histological images☆18Updated last year
- [TMI'2021][ISBI MoNuSAC'2020] 11th place solution to Multi-organ nuclei segmentation and classification challenge.☆28Updated 3 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆65Updated 11 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆63Updated last year
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆33Updated last year
- Interactive Segmentation of Nucleus☆60Updated last year
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆19Updated 8 months ago
- Multilevel cnn notebooks for Camelyon17☆18Updated 4 years ago
- GPU-accelerated stain normalization command line tool☆19Updated 11 months ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning☆32Updated 3 years ago
- Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.…☆28Updated last year
- Histopathology Slides Preprocessing Pipeline☆30Updated 2 weeks ago
- Coincides with blogpost for using geojson and shapely☆28Updated 3 years ago
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆15Updated last year
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆25Updated 3 years ago
- ☆38Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆17Updated 5 months ago
- ☆51Updated 5 months ago
- WSICS☆29Updated 5 years ago
- MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"☆36Updated 3 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆26Updated 3 months ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆59Updated 2 years ago
- Histopathology Image Analysis☆89Updated last year
- Image-to-Image Translation in PyTorch☆23Updated 11 months ago