carpenterlab / 2019_Caicedo_CytometryALinks
Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
☆13Updated 6 years ago
Alternatives and similar repositories for 2019_Caicedo_CytometryA
Users that are interested in 2019_Caicedo_CytometryA are comparing it to the libraries listed below
Sorting:
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated last week
- ☆31Updated 4 years ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- Three dimensional cross-modal image inference☆160Updated 2 weeks ago
- Open source Python library for building bioimage analysis pipelines☆185Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Cloud-based data annotation tools for biological images☆82Updated last year
- multimodal whole slide image registration in a graph structure☆95Updated last year
- ☆21Updated 4 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Read and write life sciences file formats☆141Updated 4 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 8 months ago
- ☆32Updated 2 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆121Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated 2 months ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 3 months ago
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated 2 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆122Updated 3 months ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆199Updated 5 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Transformer-based cell tracking for live-cell microscopy☆104Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago