carpenterlab / 2019_Caicedo_CytometryALinks
Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
☆14Updated 6 years ago
Alternatives and similar repositories for 2019_Caicedo_CytometryA
Users that are interested in 2019_Caicedo_CytometryA are comparing it to the libraries listed below
Sorting:
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- Image restoration for fluorescence microscopy☆323Updated last month
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- ☆22Updated 3 weeks ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆203Updated 5 years ago
- Three dimensional cross-modal image inference☆161Updated 3 months ago
- H&E histopathological staining normalization☆110Updated 6 years ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- Track cells and build cell lineages☆35Updated last year
- ☆31Updated 4 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆190Updated this week
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- A python algorithm for tracking cells in 3D deforming organs☆67Updated 2 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆315Updated last month
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 11 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- Read and write life sciences file formats☆142Updated 7 months ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated 6 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆130Updated 4 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆169Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 6 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 2 weeks ago
- Transformer-based cell tracking for live-cell microscopy☆123Updated 3 weeks ago