carpenterlab / 2019_Caicedo_CytometryALinks
Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
☆13Updated 6 years ago
Alternatives and similar repositories for 2019_Caicedo_CytometryA
Users that are interested in 2019_Caicedo_CytometryA are comparing it to the libraries listed below
Sorting:
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated last week
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- ☆22Updated 4 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆203Updated 5 years ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- ☆31Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 9 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Read and write life sciences file formats☆142Updated 6 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 4 months ago
- Image restoration for fluorescence microscopy☆321Updated last year
- Three dimensional cross-modal image inference☆161Updated last month
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 5 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- ☆32Updated 4 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆126Updated 3 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆186Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆54Updated 7 months ago
- ☆14Updated 5 years ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆43Updated 7 months ago
- QuPath extension for Segment Anything Model (SAM)☆125Updated 4 months ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆156Updated last week