☆30Dec 1, 2025Updated 3 months ago
Alternatives and similar repositories for cyto-dl
Users that are interested in cyto-dl are comparing it to the libraries listed below
Sorting:
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- dask empowered fast4dreg☆15Feb 20, 2026Updated 2 weeks ago
- ☆12Jun 29, 2021Updated 4 years ago
- Generates simulated confocal data from a ground truth signal☆10Aug 16, 2022Updated 3 years ago
- ☆12Jan 27, 2024Updated 2 years ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆124Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- MorphoFeatures code and data☆22May 4, 2023Updated 2 years ago
- Python package for deep learning based image to image transformation☆53Feb 18, 2026Updated 2 weeks ago
- GPU-accelerated image processing for everyone☆56Jul 4, 2024Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆31Jan 22, 2026Updated last month
- Learning protein structure with a differentiable simulator☆27Jul 8, 2019Updated 6 years ago
- Official implementation for "Sparse Concept Bottleneck Models: Gumbel Tricks in Contrastive Learning"☆12Jun 20, 2025Updated 8 months ago
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated last year
- Multi-Object Tracker using Integer Linear Equations☆38Dec 18, 2025Updated 2 months ago
- Cells as active droplets☆11Feb 2, 2022Updated 4 years ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- membrane segmentation in 3D for cryo-ET☆86Feb 27, 2026Updated last week
- ☆11Feb 2, 2026Updated last month
- Add images to DokuWiki pages by simply pasting them. Only modern browsers supported☆10Nov 21, 2025Updated 3 months ago
- The official PyTorch implementation of the Iterated Integrated Attributions (IIA) method.☆10Jan 23, 2024Updated 2 years ago
- Cell Segmenter using Machine Learning☆10Aug 1, 2023Updated 2 years ago
- ☆11Nov 24, 2025Updated 3 months ago
- Terminal-Bench-Science: Evaluating AI Agents on Complex Real-World Scientific Workflows in the Terminal☆25Updated this week
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago
- Light microscopy simulation in python.☆43Feb 2, 2026Updated last month
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- Three dimensional cross-modal image inference☆161Oct 15, 2025Updated 4 months ago
- Transformer-based cell tracking for live-cell microscopy☆124Feb 1, 2026Updated last month
- Repository with which to explore k-diffusion and diffusers, and within which changes to said packages may be tested.☆55Jan 28, 2024Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆117Feb 26, 2026Updated last week
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Rust bindings for Openslide☆14Feb 24, 2026Updated last week
- Code for "Inducer-tuning: Connecting Prefix-tuning and Adapter-tuning" (EMNLP 2022) and "Empowering Parameter-Efficient Transfer Learning…☆11Feb 6, 2023Updated 3 years ago
- Code for [Re] On the Reproducibility of Post-Hoc Concept Bottleneck Models.☆12Nov 27, 2024Updated last year
- [CVPR 2021] ColorRL: Reinforced Coloring for End-to-End Instance Segmentation In Computer Vision and Pattern Recognition Conference☆11Nov 19, 2025Updated 3 months ago
- [ICML-2025] We introduce Lie group Relative position Encodings (LieRE) that goes beyond RoPE in supporting n-dimensional inputs.☆14Aug 8, 2025Updated 6 months ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- A curated list of scientific image analysis resources and software tools.☆33Feb 4, 2026Updated last month