AllenCell / cyto-dlLinks
☆29Updated last month
Alternatives and similar repositories for cyto-dl
Users that are interested in cyto-dl are comparing it to the libraries listed below
Sorting:
- Python package for deep learning based image to image transformation☆53Updated last month
- ☆32Updated 5 months ago
- computer vision models for single-cell phenotyping☆81Updated 3 weeks ago
- MorphoFeatures code and data☆22Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- Cell tracking and segmentation software☆162Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 months ago
- Transformer-based cell tracking for live-cell microscopy☆120Updated last week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆128Updated 5 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 5 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Cloud-based data annotation tools for biological images☆83Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆51Updated last month
- Time arrow prediction for live-cell microscopy☆21Updated last year
- Cookiecutter for napari plugins☆71Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated this week
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆70Updated 7 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 10 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated last month
- ☆22Updated 8 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆32Updated 3 years ago
- 🌈☆66Updated 3 months ago
- ☆25Updated 2 years ago
- ☆39Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year