Deep convolutional neural networks for biological motion analysis
☆14Jan 26, 2019Updated 7 years ago
Alternatives and similar repositories for lanternfish
Users that are interested in lanternfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- J-Net: Multiresolution Neural Network for Semantic Segmentation☆10Jul 22, 2018Updated 7 years ago
- ☆10Aug 5, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 2 years ago
- Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.☆51Jun 21, 2022Updated 3 years ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 5 years ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 3 months ago
- Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)☆13Dec 12, 2022Updated 3 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆13Nov 7, 2024Updated last year
- U-net based segmentation of nuclei in microscopy images☆55Sep 13, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A small tool to track the cell trajectories with Matlab.☆12Dec 6, 2021Updated 4 years ago
- ☆12Jun 10, 2019Updated 6 years ago
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆52Mar 12, 2026Updated last month
- A Python script used to stitch a two-dimensional grid of tiles into a mosaic☆31Jul 15, 2024Updated last year
- Code for analyzing multi-electrode array recordings (spikes & LFP) for Trujillo, Gao, Negraes et al., 2019.☆16Apr 23, 2020Updated 5 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- ☆21May 30, 2018Updated 7 years ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- MemoryPool based c++ STL Allocator☆12Jul 1, 2018Updated 7 years ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- Three dimensional cross-modal image inference☆161Oct 15, 2025Updated 5 months ago
- ☆10Nov 5, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- Library for the GPU-accelerated spatial indexing and processing of particles in 2D and 3D with OpenCL. Currently offers trees based on sp…☆28Aug 5, 2024Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆24Feb 3, 2021Updated 5 years ago
- Learning Grid Cells as Vector Representation of Self-Position Coupled with Matrix Representation of Self-Motion☆18Feb 24, 2019Updated 7 years ago
- Completing overlapping elliptical convex objects through ellipse fitting☆10Apr 23, 2020Updated 5 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆14Nov 22, 2022Updated 3 years ago