U-net based segmentation of nuclei in microscopy images
☆55Sep 13, 2018Updated 7 years ago
Alternatives and similar repositories for unet4nuclei
Users that are interested in unet4nuclei are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 5 years ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆13May 30, 2022Updated 3 years ago
- ☆13Mar 26, 2025Updated last year
- Deep convolutional neural networks for biological motion analysis☆14Jan 26, 2019Updated 7 years ago
- ☆11Sep 12, 2018Updated 7 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- 2018 Data Science Bowl 2nd Place Solution☆103Jul 15, 2018Updated 7 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- J-Net: Multiresolution Neural Network for Semantic Segmentation☆10Jul 22, 2018Updated 7 years ago
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- Predicting Cell Health with Morphological Profiles☆40Jan 26, 2022Updated 4 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆48Aug 27, 2019Updated 6 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Mar 15, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Matlab implementation of several methods for cell detection and cell segmentation☆16Jun 26, 2020Updated 5 years ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 4 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- Running compute-intense parts of BigStitcher distributed☆30Apr 28, 2026Updated last week
- Multiscale simulation of multi-cellular system☆11Apr 30, 2026Updated last week
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Apr 30, 2017Updated 9 years ago
- Three dimensional cross-modal image inference☆161Oct 15, 2025Updated 6 months ago
- Open-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels☆17Feb 16, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Dec 8, 2022Updated 3 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆32Oct 2, 2024Updated last year
- ☆51Jun 26, 2018Updated 7 years ago
- Curated metadata for all studies published in the Image Data Resource☆16Apr 13, 2026Updated 3 weeks ago
- Integrated Cell project implemented in pytorch☆44Oct 15, 2025Updated 6 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Feb 14, 2024Updated 2 years ago