trangle1302 / lmc_GenCellPaintLinks
First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting
☆12Updated last year
Alternatives and similar repositories for lmc_GenCellPaint
Users that are interested in lmc_GenCellPaint are comparing it to the libraries listed below
Sorting:
- Label Free Prediction of Cell Painting from Brightfield Images☆32Updated 3 years ago
- Find profile pairs and compute metrics between them.☆21Updated last week
- ☆32Updated 3 months ago
- ☆24Updated 2 years ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆38Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- multimodal whole slide image registration in a graph structure☆96Updated last year
- Piecewise alignment for layers of mosaics☆29Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- ☆35Updated last year
- ☆24Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆31Updated 8 months ago
- version 1 scripts for CODA☆57Updated last year
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ☆10Updated 5 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆86Updated 7 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆59Updated last year
- ☆18Updated 2 years ago
- Python package for deep learning based image to image transformation☆53Updated 2 weeks ago
- ☆66Updated 9 months ago
- Microsnoop: A generalist tool for microscopy image representation☆11Updated 9 months ago
- ☆91Updated 3 weeks ago
- Codebase for training the SubCell models☆16Updated last week
- Multiple-choice microscopy pipeline☆143Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 6 months ago